BackrubMover.hh File Reference

definition of BackrubMover class and functions More...

#include <protocols/backrub/BackrubMover.fwd.hh>
#include <core/id/DOF_ID_Range.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/tree/Atom.fwd.hh>
#include <protocols/branch_angle/BranchAngleOptimizer.hh>
#include <protocols/canonical_sampling/ThermodynamicMover.hh>
#include <protocols/backrub/BackrubSegment.hh>
#include <basic/datacache/DataMap.fwd.hh>
#include <protocols/filters/Filter.fwd.hh>
#include <utility/keys/Key3Vector.hh>
#include <numeric/IntervalSet.fwd.hh>
#include <map>
#include <utility/vector0_bool.hh>
#include <utility/vector1.hh>
#include <numeric/NumericTraits.hh>

Classes
class	protocols::backrub::BackrubMover
	class for applying backrub moves to arbitrary protein segments More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::backrub

Functions
void	protocols::backrub::backrub_rotation_constants (core::kinematics::tree::AtomCOP PM2_atom, core::kinematics::tree::AtomCOP PM1_atom, core::kinematics::tree::AtomCOP P_atom, core::kinematics::tree::AtomCOP PP1_atom, core::kinematics::tree::AtomCOP PP2_atom, core::kinematics::tree::AtomCOP REF_atom, utility::vector0< double > &constants, core::Real const alpha_min=0, core::Real const alpha_max=numeric::NumericTraits< core::Real >::pi(), numeric::IntervalSet< core::Real > *tau_intervals=NULL)
	calculate constants necessary for calculating internal angles/derivatives More...
void	protocols::backrub::backrub_rotation_angles (utility::vector0< core::Real > const &constants, core::Real const tau, core::Real &bondange, core::Real &torsion1, core::Real &torsion2)
	calculate internal coordinate values for any tau value More...

Detailed Description

definition of BackrubMover class and functions

Author

Colin A. Smith (colin.nosp@m..smi.nosp@m.th@uc.nosp@m.sf.e.nosp@m.du)