AntibodyInfo.cc File Reference

Class for getting antibody-specific objects and information. More...

#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/AntibodyEnumManager.hh>
#include <protocols/antibody/clusters/CDRClusterEnum.hh>
#include <protocols/antibody/clusters/CDRClusterEnumManager.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/pose/util.tmpl.hh>
#include <protocols/antibody/util.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/toolbox/task_operations/RestrictToInterface.hh>
#include <protocols/simple_moves/ConstraintSetMover.hh>
#include <protocols/forge/methods/chainbreak_eval.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/vector1.hh>
#include <utility/vector1.functions.hh>
#include <utility/string_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <numeric/NumericTraits.hh>
#include <basic/Tracer.hh>
#include <basic/database/open.hh>
#include <math.h>
#include <boost/algorithm/string/classification.hpp>
#include <boost/algorithm/string/split.hpp>
#include <boost/lexical_cast.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody

Functions
static thread_local basic::Tracer	TR ("antibody.AntibodyInfo")
scoring::ScoreFunctionCOP	protocols::antibody::get_Pack_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_Dock_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_LoopCentral_ScoreFxn (void)
scoring::ScoreFunctionCOP	protocols::antibody::get_LoopHighRes_ScoreFxn (void)
std::ostream &	protocols::antibody::operator<< (std::ostream &out, const AntibodyInfo &ab_info)

Detailed Description

Class for getting antibody-specific objects and information.

Author

Jianqing Xu (xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om)

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static thread_local basic::Tracer TR ( "antibody.AntibodyInfo"  )

static