simple_moves Directory Reference

Directory dependency graph for simple_moves:

Directories
directory	asym_fold_and_dock
directory	bin_transitions
directory	chiral
directory	hbs
directory	oop
directory	rational_mc
directory	sidechain_moves
directory	symmetry

Files
file	AddCavitiesMover.cc
file	AddCavitiesMover.hh
file	AddChainMover.cc
file	AddChainMover.fwd.hh
	Add chain to an existing pose (as a new chain)
file	AddChainMover.hh
	switch the chain order
file	AddChainMoverCreator.hh
file	AddConstraintsToCurrentConformationMover.cc
	Add constraints to the current pose conformation.
file	AddConstraintsToCurrentConformationMover.hh
	Add constraints to the current pose conformation.
file	AddConstraintsToCurrentConformationMoverCreator.hh
file	AddJobPairData.cc
	A really simple mover that takes some data in through xml and appends it to the pose.
file	AddJobPairData.fwd.hh
	Forward Header file for the AddJobPairData Mover.
file	AddJobPairData.hh
	Header file for the AddJobPairData Mover.
file	AddJobPairDataCreator.hh
	MoverCreator definitions for the AddJobPairData mover.
file	AlignChainMover.cc
file	AlignChainMover.fwd.hh
file	AlignChainMover.hh
	switch the chain order
file	AlignChainMoverCreator.hh
file	BackboneMover.cc
	Method definitions for SmallMover and ShearMover.
file	BackboneMover.fwd.hh
	BackboneMover forward declarations header.
file	BackboneMover.hh
	Declarations and simple accessor/mutator definitions for SmallMover and ShearMover.
file	BackboneMoverCreator.hh
	This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
file	BBConRotMover.cc
file	BBConRotMover.fwd.hh
file	BBConRotMover.hh
file	BBGaussianMover.cc
	Gaussian Perturbation to backbone.
file	BBGaussianMover.fwd.hh
	Gaussian Perturbation to backbone.
file	BBGaussianMover.hh
	Gaussian Perturbation to backbone.
file	BBGaussianMoverCreator.hh
file	BoltzmannRotamerMover.cc
	implementation of BoltzmannRotamerMover class and functions
file	BoltzmannRotamerMover.fwd.hh
file	BoltzmannRotamerMover.hh
	definition of BoltzmannRotamerMover class and functions
file	BoltzmannRotamerMoverCreator.hh
	This class will create instances of protocols::moves::Mover BoltzmannRotamerMover for the protocols::moves::MoverFactory.
file	ChainSplitMover.cc
	ChainSplitMover splits a pose into two chains given a cutpoint.
file	ChainSplitMover.fwd.hh
	Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
file	ChainSplitMover.hh
	Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
file	ChangeAndResetFoldTreeMover.cc
file	ChangeAndResetFoldTreeMover.fwd.hh
file	ChangeAndResetFoldTreeMover.hh
	Basic Mover used for setting up atomic protocols.
file	ChangeAndResetFoldTreeMoverCreator.hh
file	ClearConstraintsMover.cc
	Add constraints to the current pose conformation.
file	ClearConstraintsMover.hh
	Add constraints to the current pose conformation.
file	ClearConstraintsMoverCreator.hh
file	CombinePoseMover.cc
file	CombinePoseMover.fwd.hh
file	CombinePoseMover.hh
file	ConsensusDesignMover.cc
	cc file for ConsensusDesignMover
file	ConsensusDesignMover.fwd.hh
	fwd.hh file for ConsensusDesignMover
file	ConsensusDesignMover.hh
	header file for ConsensusDesignMover
file	ConsensusDesignMoverCreator.hh
file	ConstrainToIdealMover.cc
	Adds to your pose constraints suitable for idealization of bond lengths and angles.
file	ConstrainToIdealMover.fwd.hh
	ConstrainToIdealMover forward declarations header.
file	ConstrainToIdealMover.hh
	Adds to your pose constraints suitable for idealization of bond lengths and angles.
file	ConstraintSetMover.cc
	Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
file	ConstraintSetMover.fwd.hh
file	ConstraintSetMover.hh
	Assigns a ConstraintSet to a pose. Reads and creats ConstraintSet from file via command line option -constraints::cst_file, unless a ConstraintSet is supplied via the constructor or the constraint_set() method.
file	ConstraintSetMoverCreator.hh
file	ContingentAcceptMover.cc
file	ContingentAcceptMover.fwd.hh
	switch the chain order
file	ContingentAcceptMover.hh
	switch the chain order
file	ContingentAcceptMoverCreator.hh
file	CopyDofMover.cc
file	CopyDofMover.fwd.hh
file	CopyDofMover.hh
file	CoupledMover.cc
	implementation of CoupledMover class and functions
file	CoupledMover.fwd.hh
file	CoupledMover.hh
	definition of CoupledMover class and functions
file	CoupledMoverCreator.hh
	This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory.
file	CutChainMover.cc
file	CutChainMover.fwd.hh
	ForceDisulfidesMover forward declarations header.
file	CutChainMover.hh
file	CutChainMoverCreator.hh
file	CyclizationMover.cc
	Implimentation file for CyclizationMover.
file	CyclizationMover.fwd.hh
	Forward header file for CyclizationMover.
file	CyclizationMover.hh
	Header file for CyclizationMover.
file	ddG.cc
	implementation of the ddG class for computing interface delta dGs
file	ddG.fwd.hh
	Forward declarations for ddG.
file	ddG.hh
	calculate interface ddg
file	ddGCreator.hh
	Declaration of the ddGCreator class for the ddG mover.
file	DesignRepackMover.cc
file	DesignRepackMover.fwd.hh
	Forward declations for DesignRepackMover.
file	DesignRepackMover.hh
file	DisulfideInsertionMover.cc
	a mover that closes a receptor bound peptide by an added disulfide bond
file	DisulfideInsertionMover.fwd.hh
	Forward header file for DisulfideInsertionMover.
file	DisulfideInsertionMover.hh
	Header file for DisulfideInsertionMover.
file	DME_FilterMover.cc
	performs a move and accepts it according to Monte Carlo accept/reject criterion.
file	DME_FilterMover.hh
	performs a move and accepts it according to Monte Carlo accept/reject criterion.
file	DOFHistogramRecorder.cc
file	DOFHistogramRecorder.fwd.hh
	Forward declarations for class DOFHistogramRecorder.
file	DOFHistogramRecorder.hh
file	DumpPdb.cc
file	DumpPdb.hh
file	DumpPdbCreator.hh
	Declaration of the MoverCreator class for the DumpPdb.
file	ExtendedPoseMover.cc
file	ExtendedPoseMover.fwd.hh
file	ExtendedPoseMover.hh
file	ExtendedPoseMoverCreator.cc
file	ExtendedPoseMoverCreator.hh
file	FavorSequenceProfile.cc
	Add a SequenceProfileConstraint to a pose.
file	FavorSequenceProfile.hh
	Add a SequenceProfileConstraint to a pose.
file	FavorSequenceProfileCreator.hh
	Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
file	FavorSymmetricSequence.cc
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequence.fwd.hh
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequence.hh
	apply constraints to enforce a symmetric sequence
file	FavorSymmetricSequenceCreator.hh
	apply constraints to enforce a symmetric sequence
file	FindConsensusSequence.cc
	Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
file	FindConsensusSequence.fwd.hh
	Finds the consensus sequence that optimizes energy of all input poses.
file	FindConsensusSequence.hh
	Takes in multiple poses from the MSDJobDistributor and finds the consensus sequence that optimizes energy of all input poses.
file	FindConsensusSequenceCreator.hh
	Multistate design mover used for constrained MSD application.
file	ForceDisulfidesMover.cc
file	ForceDisulfidesMover.fwd.hh
	ForceDisulfidesMover forward declarations header.
file	ForceDisulfidesMover.hh
file	ForceDisulfidesMoverCreator.hh
file	FragmentMover.cc
file	FragmentMover.fwd.hh
	set of fragments for a certain alignment frame
file	FragmentMover.hh
	set of fragments
file	GenericMonteCarloMover.cc
	perform a given mover and sample structures by MonteCarlo
file	GenericMonteCarloMover.fwd.hh
file	GenericMonteCarloMover.hh
	perform a given mover and sample structures by MonteCarlo
file	GenericMonteCarloMoverCreator.hh
file	GreenPacker.cc
	packing mover that makes extensive reuse of rotamer pair energies class definition
file	GreenPacker.fwd.hh
	packing mover that makes extensive reuse of rotamer pair energies class forward declaration
file	GreenPacker.hh
	packing mover that makes extensive reuse of rotamer pair energies class declaration
file	GunnCost.cc
file	GunnCost.hh
file	LoadPDBMover.cc
	simple mover that loads a pdb from file and replaces the current pdb with it. Useful for checkpointing
file	LoadPDBMover.fwd.hh
	switch the chain order
file	LoadPDBMover.hh
	switch the chain order
file	LoadPDBMoverCreator.hh
file	LoadUnboundRotMover.cc
	LoadUnboundRotMover methods implemented.
file	LoadUnboundRotMover.fwd.hh
file	LoadUnboundRotMover.hh
file	LoadUnboundRotMoverCreator.hh
file	MakePolyXMover.cc
	convert pose to poly XXX: any amino acid, default poly Ala
file	MakePolyXMover.fwd.hh
	convert pose to poly XXX: any amino acid, default poly Ala
file	MakePolyXMover.hh
	header file of MakePolyXMover.cc
file	MakePolyXMoverCreator.hh
	This class will create instances of protocols::moves::Mover MakePolyXMover for the protocols::moves::MoverFactory.
file	MembraneTopology.cc
file	MembraneTopology.fwd.hh
file	MembraneTopology.hh
file	MembraneTopologyCreator.hh
file	MinMover.cc
	method definitions for MinMover
file	MinMover.fwd.hh
	MinMover forward declarations header.
file	MinMover.hh
	class definition for MinMover
file	MinMoverCreator.hh
file	MinPackMover.cc
	Implementation of the MinPackMover class; a wrapper class for invoking core::pack::min_pack.
file	MinPackMover.fwd.hh
	Forward declaration of the mover class to both pack and minimize rotamers.
file	MinPackMover.hh
	protocols::moves::Mover class to invoke core::pack::min_pack
file	MinPackMoverCreator.hh
	This class will create instances of protocols::moves::Mover MinPackMover for the protocols::moves::MoverFactory.
file	MissingDensityToJumpMover.cc
	Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
file	MissingDensityToJumpMover.fwd.hh
	Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
file	MissingDensityToJumpMover.hh
	Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
file	ModifyVariantTypeMover.cc
	Modify variant type to residues.
file	ModifyVariantTypeMover.fwd.hh
file	ModifyVariantTypeMover.hh
file	ModifyVariantTypeMoverCreator.hh
file	MonteCarloRecover.cc
file	MonteCarloRecover.fwd.hh
file	MonteCarloRecover.hh
file	MonteCarloRecoverCreator.hh
file	MonteCarloReset.cc
file	MonteCarloReset.fwd.hh
file	MonteCarloReset.hh
	perform a given mover and sample structures by MonteCarlo
file	MonteCarloResetCreator.hh
file	MonteCarloTest.cc
file	MonteCarloTest.fwd.hh
file	MonteCarloTest.hh
	perform a given mover and sample structures by MonteCarlo
file	MonteCarloTestCreator.hh
file	MSDMover.cc
	Multistate design mover used for restrained multistate design.
file	MSDMover.fwd.hh
	Multistate design mover used for constrained MSD application.
file	MSDMover.hh
	Multistate design mover used for restrained multistate design.
file	MSDMoverCreator.hh
	Multistate design mover used for constrained MSD application.
file	MutateResidue.cc
file	MutateResidue.fwd.hh
file	MutateResidue.hh
file	MutateResidueCreator.hh
file	O2M_MutateMover.cc
	Mover that takes a single starting structure and some task ops, and produces every single possible point mutation DOES NOT WORK WITH ROSETTASCRIPTS.
file	O2M_MutateMover.fwd.hh
	O2M_MutateMover forward declarations header.
file	O2M_MutateMover.hh
	Mover that takes a starting structure and some task ops, and produces every single possible point mutation DOES NOT WORK WITH ROSETTASCRIPTS.
file	PackRotamersMover.cc
file	PackRotamersMover.fwd.hh
file	PackRotamersMover.hh
file	PackRotamersMoverCreator.hh
file	PackRotamersMoverLazy.cc
file	PackRotamersMoverLazy.fwd.hh
file	PackRotamersMoverLazy.hh
file	PackRotamersMoverLazyCreator.hh
file	PDBReloadMover.cc
file	PDBReloadMover.fwd.hh
	PDBReloadMover forward declarations header.
file	PDBReloadMover.hh
file	PDBReloadMoverCreator.hh
file	PeptideStapleMover.cc
	Peptide Staples are covalent links between i/i+[4,7] residues in a helix. Applying a PeptideStapleMover creates one of these links.
file	PeptideStapleMover.fwd.hh
	Forward header for PeptideStapleMover.
file	PeptideStapleMover.hh
	Definition of classes for placing peptide staples in the pose.
file	ProlineFixMover.cc
file	ProlineFixMover.fwd.hh
file	ProlineFixMover.hh
file	PSSM2BfactorMover.cc
file	PSSM2BfactorMover.fwd.hh
	switch the chain order
file	PSSM2BfactorMover.hh
file	PSSM2BfactorMoverCreator.hh
file	RandomOmegaFlipMover.cc
	RandomOmegaFlipMover methods implemented.
file	RandomOmegaFlipMover.fwd.hh
	RandomOmegaFlipMover forward declarations header.
file	RandomOmegaFlipMover.hh
	RandomOmegaFlipMover class declaration file.
file	RandomOmegaFlipMoverCreator.hh
	This class will create instances of RandomOmegaFlipMover for the MoverFactory.
file	RandomTorsionMover.cc
	RandomTorsionMover methods implemented.
file	RandomTorsionMover.fwd.hh
	RandomTorsionMover forward declarations header.
file	RandomTorsionMover.hh
	RandomTorsionMover class declaration file.
file	RandomTorsionMoverCreator.hh
	This class will create instances of RandomTorsionMover for the MoverFactory.
file	RepackSidechainsMover.cc
file	RepackSidechainsMover.fwd.hh
file	RepackSidechainsMover.hh
file	RepackSidechainsMoverCreator.hh
file	RepeatPropagationMover.cc
	Can repeat both a symmetric, non symmetric & broken pose.
file	RepeatPropagationMover.fwd.hh
file	RepeatPropagationMover.hh
	Can repeat both a symmetric and non symmetric protein. Modifies the pose.
file	RepeatPropagationMoverCreator.hh
file	ReportEffectivePKA.cc
file	ReportEffectivePKA.hh
file	ReportEffectivePKACreator.hh
	This class will create instances of Mover ReportEffectivePKA for the MoverFactory.
file	RepulsiveOnlyMover.cc
	calculate repulsive energy only for certain residues
file	RepulsiveOnlyMover.fwd.hh
file	RepulsiveOnlyMover.hh
file	ResetBaselineMover.cc
file	ResetBaselineMover.fwd.hh
	switch the chain order
file	ResetBaselineMover.hh
	switch the chain order
file	ResetBaselineMoverCreator.hh
file	ResidueTypeConstraintMover.cc
	Assigns a ResidueTypeConstraint to a pose.
file	ResidueTypeConstraintMover.fwd.hh
file	ResidueTypeConstraintMover.hh
	Assigns a ResidueTypeConstraint to a pose.
file	ResidueTypeConstraintMoverCreator.hh
	This class will create instances of protocols::moves::Mover ResidueTypeConstraintMover for the protocols::moves::MoverFactory.
file	ResTypeFragmentMover.cc
file	ResTypeFragmentMover.fwd.hh
file	ResTypeFragmentMover.hh
file	ReturnSidechainMover.cc
	ReturnSidechainMover methods implemented.
file	ReturnSidechainMover.fwd.hh
	ReturnSidechainMover forward declarations header.
file	ReturnSidechainMover.hh
	protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
file	RingConformationMover.cc
	Method definitions for RingConformationMover.
file	RingConformationMover.fwd.hh
	Forward declarations for RingConformationMover.
file	RingConformationMover.hh
	Declarations and simple accessor/mutator definitions for RingConformationMover.
file	RotamerizeMover.cc
	Definitions of class methods for RotamerizeMover.
file	RotamerizeMover.fwd.hh
	forward declarations for rotamerizing
file	RotamerizeMover.hh
	class declaration for RotamerizeMover
file	RotamerTrialsMinMover.cc
	protocols::moves::Mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
file	RotamerTrialsMinMover.fwd.hh
file	RotamerTrialsMinMover.hh
	Wrapper mover for Rotamer-Trials with Minimization (based on RotamerTrialsMover)
file	RotamerTrialsMinMoverCreator.hh
	This class will create instances of RotamerTrialsMinMover for the protocols::moves::MoverFactory.
file	RotamerTrialsMover.cc
file	RotamerTrialsMover.fwd.hh
file	RotamerTrialsMover.hh
file	RotamerTrialsMoverCreator.hh
	This class will create instances of protocols::moves::Mover SidechainMCMover for the protocols::moves::MoverFactory.
file	SaneMinMover.cc
file	SaneMinMover.fwd.hh
	MinMover forward declarations header.
file	SaneMinMover.hh
file	SaneMinMoverCreator.hh
file	ScoreMover.cc
file	ScoreMover.fwd.hh
	ScoreMover forward declarations header.
file	ScoreMover.hh
file	ScoreMoverCreator.hh
file	SequenceProfileMover.cc
	moverization of code that was embedded in the parser
file	SequenceProfileMover.fwd.hh
	BS mover to get around a stupid "mover" that was embedded in the parser.
file	SequenceProfileMover.hh
	BS mover to get around a stupid "mover" that was embedded in the parser.
file	SequenceProfileMoverCreator.hh
file	SetReturningPackRotamersMover.cc
	A pack mover which returns not just the best packer solution, but all nloop solutions.
file	SetReturningPackRotamersMover.fwd.hh
file	SetReturningPackRotamersMover.hh
	A PackRotamers mover which returns a set of packed poses for when ndruns/nloop is in use.
file	SetTorsion.cc
file	SetTorsion.fwd.hh
file	SetTorsion.hh
file	SetTorsionCreator.hh
file	ShakeStructureMover.cc
file	ShakeStructureMover.fwd.hh
file	ShakeStructureMover.hh
file	ShortBackrubMover.cc
	implementation of ShortBackrubMover class and functions
file	ShortBackrubMover.fwd.hh
file	ShortBackrubMover.hh
	definition of ShortBackrubMover class and functions
file	ShortBackrubMoverCreator.hh
	This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory.
file	SmoothFragmentMover.cc
file	SmoothFragmentMover.fwd.hh
file	SmoothFragmentMover.hh
file	SuperimposeMover.cc
file	SuperimposeMover.fwd.hh
	SuperimposeMover forward declarations header.
file	SuperimposeMover.hh
file	SuperimposeMoverCreator.hh
file	SwitchChainOrderMover.cc
file	SwitchChainOrderMover.fwd.hh
	switch the chain order
file	SwitchChainOrderMover.hh
	switch the chain order
file	SwitchChainOrderMoverCreator.hh
file	SwitchResidueTypeSetMover.cc
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMover.fwd.hh
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMover.hh
	switch between residue type sets (e.g. centroid and all atom)
file	SwitchResidueTypeSetMoverCreator.hh
file	SymmetricFragmentMover.cc
file	SymmetricFragmentMover.fwd.hh
	set of fragments for a certain alignment frame
file	SymmetricFragmentMover.hh
	set of fragments
file	TailsScoreMover.cc
file	TailsScoreMover.hh
file	TaskAwareMinMover.cc
	TaskAwareMinMover methods implemented.
file	TaskAwareMinMover.fwd.hh
	TaskAwareMinMover forward declarations header.
file	TaskAwareMinMover.hh
	MinMover which updates MoveMap to mirror PackerTask.
file	TaskAwareMinMoverCreator.hh
file	TorsionDOFMover.cc
	TorsionDOFMover methods implemented.
file	TorsionDOFMover.fwd.hh
	TorsionDOFMover forward declarations header.
file	TorsionDOFMover.hh
	TorsionDOFMover header.
file	TorsionSetMover.cc
file	TorsionSetMover.fwd.hh
file	TorsionSetMover.hh
file	Tumble.cc
	Add constraints to the current pose conformation.
file	Tumble.hh
file	TumbleCreator.hh
	Declaration of the MoverCreator class for the Tumble.
file	UniformPositionMover.cc
	Apply a uniform (deterministic move) to a given position.
file	UniformPositionMover.fwd.hh
	Apply a uniform (deterministic move) to a given position.
file	UniformPositionMover.hh
	Apply a uniform (deterministic move) to a given position.
file	VirtualRootMover.cc
	Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable.
file	VirtualRootMover.fwd.hh
	VirtualRootMover forward declarations header.
file	VirtualRootMover.hh
	Manipulate virtual roots on poses.
file	VirtualRootMoverCreator.hh
file	WobbleMover.cc
file	WobbleMover.hh