- a -

• ALL : protocols::protein_interface_design::filters::AtomicContactCountFilter
• ALL_STAGES : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio

- b -

• BAD_LOW_PROB : protocols::noesy_assign::CrossPeak
• BOTH_SC_AND_BB : protocols::flexpack::interaction_graph::FlexbbInteractionGraph

- c -

• CAN_CONTROL : protocols::environment::claims::ClaimStrength
• CAN_INIT : protocols::topology_broker::claims::DofClaim
• CEN2FULLATOM : protocols::abinitio::IterativeBase
• CROSS_CHAIN_ALL : protocols::protein_interface_design::filters::AtomicContactCountFilter
• CROSS_CHAIN_DETECTED : protocols::protein_interface_design::filters::AtomicContactCountFilter
• CROSS_JUMP : protocols::protein_interface_design::filters::AtomicContactCountFilter

- d -

• DESIGN : protocols::flxbb::LayerDesignOperation
• DESIGNABLE : protocols::flxbb::LayerDesignOperation
• DOES_NOT_CONTROL : protocols::environment::claims::ClaimStrength

- e -

• EGGSHELL : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• EGGSHELL_SURROUNDING : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• EL_DISTVIOL : protocols::noesy_assign::CrossPeak
• EL_MAXASSIGN : protocols::noesy_assign::CrossPeak
• EL_MINPEAKVOL : protocols::noesy_assign::CrossPeak
• EL_NETWORK : protocols::noesy_assign::CrossPeak
• EMPTY : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• ENUMERATION : protocols::abinitio::IterativeBase
• EQUALS : protocols::enzdes::ValueEvaluator
• EXCLUSIVE : protocols::environment::claims::ClaimStrength , protocols::topology_broker::claims::DofClaim

- f -

• FINISHED : protocols::abinitio::IterativeBase
• FIXED : protocols::flxbb::LayerDesignOperation
• Full : protocols::hotspot_hashing::movers::PlaceProbeMover

- h -

• HI_AMBIG : protocols::noesy_assign::CrossPeak
• HI_NEAR_UNAMBIG : protocols::noesy_assign::CrossPeak
• HI_UNAMBIG : protocols::noesy_assign::CrossPeak
• HSURFACE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid

- i -

• INIT : protocols::topology_broker::claims::DofClaim
• is_interface : protocols::ligand_docking::ligand_options::InterfaceInfo

- l -

• LARGER : protocols::enzdes::ValueEvaluator
• LAST_CENTROID_START : protocols::abinitio::IterativeBase
• LIGAND : protocols::pockets::ComparisonGrid
• LigandMinusProteinPlus : protocols::ligand_docking::rdf::RDFBase
• LigandPlusProteinMinus : protocols::ligand_docking::rdf::RDFBase

- m -

• MAX_CLASS : protocols::noesy_assign::CrossPeak
• MED_AMBIG : protocols::noesy_assign::CrossPeak
• MODE_all_atom_rmsd : protocols::pose_reporters::RMSDReporter
• MODE_CA_rmsd : protocols::pose_reporters::RMSDReporter
• MODE_NONE : protocols::pose_reporters::RMSDReporter
• MUST_CONTROL : protocols::environment::claims::ClaimStrength
• MUT_COMPLEXES_LIST_FILE : protocols::optimize_weights::DDGBindOptEData
• MUT_UNBOUNDS_LIST_FILE : protocols::optimize_weights::DDGBindOptEData

- n -

• near_interface : protocols::ligand_docking::ligand_options::InterfaceInfo
• NEED_TO_KNOW : protocols::topology_broker::claims::DofClaim
• NO_DESIGN : protocols::flxbb::LayerDesignOperation
• NOESY_PHASEII_S2_RESAMPLING : protocols::abinitio::IterativeBase
• NOESY_PHASEII_TOPO : protocols::abinitio::IterativeBase
• non_interface : protocols::ligand_docking::ligand_options::InterfaceInfo
• None : protocols::hotspot_hashing::movers::PlaceProbeMover
• NOT_ELIMINATED : protocols::noesy_assign::CrossPeak

- o -

• OMIT : protocols::flxbb::LayerDesignOperation
• OnePerStruct : protocols::hotspot_hashing::movers::PlaceProbeMover

- p -

• PACKABLE : protocols::flxbb::LayerDesignOperation
• PO_BURIED : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• PO_EDGE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• PO_SURF : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• POCKET : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• Probe : protocols::hotspot_hashing::movers::PlaceProbeMover
• PROTEIN : protocols::pockets::ComparisonGrid , protocols::pockets::ElectrostaticpotentialGrid , protocols::pockets::PocketGrid
• PSEUDO_PROTEIN : protocols::pockets::ElectrostaticpotentialGrid
• PSP : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• PSURFACE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• PURE_TOPO_RESAMPLING : protocols::abinitio::IterativeBase

- r -

• real_value : protocols::simple_moves::AddJobPairData
• REJECTED : protocols::topology_broker::claims::DofClaim
• RIGID_CORE_RESAMPLING : protocols::abinitio::IterativeBase
• RunAll : protocols::hotspot_hashing::movers::PlaceProbeMover

- s -

• SameSign : protocols::ligand_docking::rdf::RDFBase
• SC_ONLY : protocols::flexpack::interaction_graph::FlexbbInteractionGraph
• SMALLER : protocols::enzdes::ValueEvaluator
• SOLVENT : protocols::pockets::ElectrostaticpotentialGrid
• ST_SURFACE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• STAGE2_RESAMPLING : protocols::abinitio::IterativeBase
• STAGE_1 : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio
• STAGE_2 : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio
• STAGE_3a : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio
• STAGE_3b : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio
• STAGE_4 : protocols::abinitio::ClassicAbinitio , protocols::abinitio::MembraneAbinitio
• STAGE_4rot : protocols::abinitio::ClassicAbinitio
• STAGE_5 : protocols::abinitio::ClassicAbinitio
• string_value : protocols::simple_moves::AddJobPairData
• SUBTARGET : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• SURFACE : protocols::pockets::ElectrostaticpotentialGrid

- t -

• T_SURFACE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• TARGET : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• TIMING_CPU : protocols::wum::MPI_WorkUnitManager
• TIMING_end : protocols::wum::MPI_WorkUnitManager
• TIMING_IDLE : protocols::wum::MPI_WorkUnitManager
• TIMING_IO_READ : protocols::wum::MPI_WorkUnitManager
• TIMING_IO_WRITE : protocols::wum::MPI_WorkUnitManager
• TIMING_TRANSFER_RECV : protocols::wum::MPI_WorkUnitManager
• TIMING_TRANSFER_SEND : protocols::wum::MPI_WorkUnitManager
• TIMING_WAIT : protocols::wum::MPI_WorkUnitManager
• TOPO_RESAMPLING : protocols::abinitio::IterativeBase
• TP_BURIED : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• TP_EDGE : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• TP_POCKET : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid
• TP_SURF : protocols::pockets::ComparisonGrid , protocols::pockets::PocketGrid

- u -

• UNAMBIG_MED_PROB : protocols::noesy_assign::CrossPeak

- w -

• WT_COMPLEXES_LIST_FILE : protocols::optimize_weights::DDGBindOptEData
• WT_UNBOUNDS_LIST_FILE : protocols::optimize_weights::DDGBindOptEData