- c -

• Cache() : Cache
• CacheableString() : basic::datacache::CacheableString
• CacheableStringFloatMap() : basic::datacache::CacheableStringFloatMap
• CacheableStringMap() : basic::datacache::CacheableStringMap
• calc_centered_coordinate_rmsd() : numeric::alignment::QCP_Kernel< Real >
• calc_coordinate_rmsd() : numeric::alignment::QCP_Kernel< Real >
• calc_rmsd_Theobald_method() : numeric::alignment::QCP_Kernel< Real >
• calculate_auc() : numeric::RocCurve
• calculate_rho() : Solver , Solver_NU
• calculate_tracer_level() : basic::Tracer
• calculate_tracer_visibilities() : basic::Tracer
• calculate_visibility() : basic::Tracer , basic::Tracer::TracerProxy
• Calculator() : numeric::Calculator
• CalculatorParser() : numeric::CalculatorParser
• can_hold_another() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• Canonicalize() : basic::sampling::orientations::Quaternion
• capacity() : numeric::random::WeightedReservoirSampler< T > , utility::heap , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• cfg_nd() : numeric::fourier::kiss_fftndr_state
• cfg_r() : numeric::fourier::kiss_fftndr_state
• channel() : basic::Tracer
• char_msg() : utility::SimulateMPIMessage
• check_crc() : utility::io::izstream
• check_invariants() : numeric::Polynomial_1d
• check_key() : utility::options::OptionCollection
• check_restricted_access() : utility::options::Option
• check_specs() : utility::options::OptionCollection
• check_table_and_perform_write() : basic::database::schema_generator::Schema
• check_type() : utility::json_spirit::Value_impl< Config >
• check_values() : utility::options::OptionCollection
• child() : numeric::expression_parser::ArithmeticASTFactor
• children_begin() : numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm
• children_end() : numeric::expression_parser::ArithmeticASTExpression , numeric::expression_parser::ArithmeticASTFunction , numeric::expression_parser::ArithmeticASTRestExpression , numeric::expression_parser::ArithmeticASTRestTerm , numeric::expression_parser::ArithmeticASTTerm
• cl_value() : utility::options::Option , utility::options::ResidueChainVectorOption , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• clash() : numeric::geometry::hashing::xyzStripeHash
• clash_amount() : numeric::geometry::hashing::xyzStripeHash
• clash_check_ball() : numeric::geometry::hashing::xyzStripeHash
• clash_check_residue_pairs() : numeric::geometry::hashing::xyzStripeHash
• clash_not_resid() : numeric::geometry::hashing::xyzStripeHash
• clash_raw() : numeric::geometry::hashing::xyzStripeHash
• ClassKeyMap() : utility::keys::ClassKeyMap< K, T, C >
• ClassKeyVector() : utility::keys::ClassKeyVector< K, T, C >
• cleaned() : utility::options::OptionCollection
• clear() : basic::datacache::DataCache< Data > , basic::resource_manager::LazyResourceManager , basic::resource_manager::ResourceManager
• Clear() : basic::sampling::orientations::QuatSet
• clear() : numeric::IntervalSet< typename > , numeric::random::WeightedSampler , numeric::sphericalVector< typename > , numeric::xyzMatrix< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , utility::Bound< typename > , utility::file::FileName , utility::file::PathName , utility::in_place_list< T > , utility::io::FileContentsMap , utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyLookup< K > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::list_element< T > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::recent_history_queue , utility::signals::SignalHub< ResultType, Signal > , utility::tag::Tag
• clear_buffer() : utility::signals::BufferedSignalHub< ResultType, Signal >
• clear_input_files() : utility::Inline_File_Provider
• clear_processed_msgs() : utility::SimulateMPIData
• clear_rms() : numeric::model_quality::RmsData
• clear_tokens() : utility::signals::TokenHub< ResultType, Signal >
• clone() : basic::datacache::CacheableData , basic::datacache::CacheableString , basic::datacache::CacheableStringFloatMap , basic::datacache::CacheableStringMap , basic::datacache::DiagnosticData , basic::datacache::WriteableCacheableMap , basic::MetricValue< T > , basic::MetricValueBase
• Clone() : numeric::interpolation::spline::BicubicSpline
• clone() : numeric::interpolation::spline::CubicSpline
• Clone() : numeric::interpolation::spline::PolycubicSpline , numeric::interpolation::spline::TricubicSpline , numeric::MathMatrix< T >
• clone() : numeric::MathVector< T >
• Clone() : utility::graph::RingDetection< Graph >
• clone() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::options::AnyOption< T > , utility::options::AnyOptionKey , utility::options::AnyVectorOption< T > , utility::options::AnyVectorOptionKey , utility::options::BooleanOption , utility::options::BooleanOptionKey , utility::options::BooleanVectorOption , utility::options::BooleanVectorOptionKey , utility::options::FileOption , utility::options::FileOptionKey , utility::options::FileVectorOption , utility::options::FileVectorOptionKey , utility::options::IntegerOption , utility::options::IntegerOptionKey , utility::options::IntegerVectorOption , utility::options::IntegerVectorOptionKey , utility::options::Option , utility::options::OptionKey , utility::options::PathOption , utility::options::PathOptionKey , utility::options::PathVectorOption , utility::options::PathVectorOptionKey , utility::options::RealOption , utility::options::RealOptionKey , utility::options::RealVectorOption , utility::options::RealVectorOptionKey , utility::options::ResidueChainVectorOption , utility::options::ResidueChainVectorOptionKey , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::ScalarOptionKey , utility::options::StringOption , utility::options::StringOptionKey , utility::options::StringVectorOption , utility::options::StringVectorOptionKey , utility::options::VectorOption , utility::options::VectorOption_T_< K, T > , utility::options::VectorOptionKey , utility::tag::Tag
• close() : options.KeepSameFile , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostream< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ozstream
• closest_match() : numeric::coordinate_fitting::FlatLookup< QueryType, EntryType, Real >
• ClusteringTreeNode() : numeric::ClusteringTreeNode
• code() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C > , utility::keys::VariantKey< K > , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• coefficients() : numeric::Polynomial_1d
• col() : numeric::xyzMatrix< typename >
• col_x() : numeric::xyzMatrix< typename >
• col_y() : numeric::xyzMatrix< typename >
• col_z() : numeric::xyzMatrix< typename >
• collapse() : numeric::MultiDimensionalHistogram
• ColPointers() : numeric::ColPointers< T >
• cols() : numeric::xyzMatrix< typename >
• cols_constructor() : numeric::xyzMatrix< typename >
• ColsPointer() : numeric::ColsPointer< T >
• Column() : basic::database::schema_generator::Column
• columns() : basic::database::schema_generator::ForeignKey , basic::database::schema_generator::Index , basic::database::schema_generator::PrimaryKey
• ColVectors() : numeric::ColVectors< T >
• CombinePaths() : utility::graph::RingDetection< Graph >
• commit_transaction() : utility::sql_database::session
• comparable() : utility::keys::AutoKey< O, S, C > , utility::keys::Key , utility::keys::UserKey< O, S, C >
• CompareKDPoints() : numeric::kdtree::CompareKDPoints
• ComparingTracer() : basic::ComparingTracer
• compressed() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::ocstream , utility::io::orstream , utility::io::ozstream
• compute() : numeric::Calculator , numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• compute_in_place() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• compute_lb_function_solution() : numeric::interpolation::spline::Interpolator
• compute_ub_function_solution() : numeric::interpolation::spline::Interpolator
• condition() : numeric::expression_parser::ITEExpression
• conjugate() : numeric::Quaternion< typename >
• conjugated() : numeric::Quaternion< typename >
• connect() : utility::signals::SignalHub< ResultType, Signal >
• connect_tokenize() : utility::signals::TokenHub< ResultType, Signal >
• consider_sample() : numeric::random::WeightedReservoirSampler< T >
• const_iterator() : numeric::geometry::hashing::xyzStripeHash::const_iterator
• const_location() : numeric::kdtree::KDPoint
• Constraint() : basic::database::schema_generator::Constraint
• contains() : numeric::geometry::BoundingBox< typename > , numeric::geometry::hashing::SixDCoordinateBinner , utility::vectorL< SSize, T, A >
• contains_composite_elements() : utility::json_spirit::Generator< Value_type, Ostream_type >
• continue_at_dimension() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• contract() : numeric::geometry::BoundingBox< typename >
• convert() : utility::py::COP_to_Python_converter< T >
• CoordinateArray_RMSD_FlatLookup() : numeric::coordinate_fitting::CoordinateArray_RMSD_FlatLookup< Real >
• copy_leaf_ids() : numeric::ClusteringTreeNode
• copy_member_ids() : numeric::ClusteringTreeNode
• could_not_create_resource_error_message() : basic::resource_manager::fallback_configuration::NativeFallbackConfiguration , basic::resource_manager::FallbackConfiguration
• count() : numeric::model_quality::RmsData
• Counter() : numeric::geometry::hashing::Counter
• counts() : numeric::MultiDimensionalHistogram
• coval() : utility::heap
• create() : utility::factory::Factory< typename > , utility::tag::Tag
• create_data() : basic::datacache::WriteableCacheableDataCreator
• create_expression_tree() : numeric::expression_parser::ExpressionCreator
• create_fallback_configuration() : basic::resource_manager::fallback_configuration::NativeFallbackConfigurationCreator , basic::resource_manager::FallbackConfigurationCreator , basic::resource_manager::FallbackConfigurationFactory
• create_options() : basic::database::DatabaseSessionOptionsCreator , basic::resource_manager::ResourceOptionsCreator
• create_resource() : basic::database::DatabaseSessionLoader , basic::resource_manager::LazyResourceManager , basic::resource_manager::ResourceLoader
• create_resource_by_job_tag() : basic::resource_manager::LazyResourceManager
• create_resource_loader() : basic::database::DatabaseSessionLoaderCreator , basic::resource_manager::ResourceLoaderCreator , basic::resource_manager::ResourceLoaderFactory
• create_resource_locator() : basic::resource_manager::locator::DatabaseResourceLocatorCreator , basic::resource_manager::locator::FileListResourceLocatorCreator , basic::resource_manager::locator::FileSystemResourceLocatorCreator , basic::resource_manager::locator::NullResourceLocatorCreator , basic::resource_manager::ResourceLocatorCreator , basic::resource_manager::ResourceLocatorFactory
• create_resource_manager() : basic::resource_manager::ResourceManagerCreator
• create_resource_manager_from_options_system() : basic::resource_manager::ResourceManagerFactory
• create_resource_options() : basic::resource_manager::ResourceOptionsFactory
• create_resources() : basic::resource_manager::LazyResourceManager
• create_singleton_instance() : basic::datacache::WriteableCacheableDataFactory , basic::message_listening::MessageListenerFactory , basic::resource_manager::FallbackConfigurationFactory , basic::resource_manager::ResourceLoaderFactory , basic::resource_manager::ResourceLocatorFactory , basic::resource_manager::ResourceManager , basic::resource_manager::ResourceManagerFactory , basic::resource_manager::ResourceOptionsFactory , basic::sampling::orientations::QuaternionGridManager , utility::Inline_File_Provider
• creators() : utility::factory::WidgetFactory< Creator >
• cross() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• cross_product() : numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• CSI_Sequence() : basic::CSI_Sequence
• CubicSpline() : numeric::interpolation::spline::CubicSpline
• curr_num_in_recent_history() : utility::recent_history_queue
• current_callback_object() : utility::py::PyExitCallback
• current_links() : utility::signals::SignalHub< ResultType, Signal >