- r -

• R() : numeric::BodyPosition< typename >
• R_refresh() : numeric::BodyPosition< typename >
• rad2deg() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radial_bin_index() : numeric::geometry::hashing::SixDCoordinateBinner
• radians_to_degrees() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• radius() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash::const_iterator , numeric::sphericalVector< typename >
• random_element() : numeric::random::RandomGenerator
• random_point() : numeric::IntervalSet< typename >
• random_range() : numeric::random::RandomGenerator
• random_sample() : numeric::random::WeightedSampler
• RandomGenerator() : numeric::random::RandomGenerator
• range() : numeric::MultiDimensionalHistogram , utility::fixedsizearray1< T, S >
• rbegin() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• rdbuf() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT > , utility::io::ocstream , utility::io::orstream , utility::io::ozstream
• read() : utility::io::icstream , utility::io::irstream , utility::io::izstream , utility::tag::Tag
• read_data() : numeric::kdtree::KDPoint
• read_from_db() : numeric::interpolation::Histogram< typename, typename >
• read_next() : utility::json_spirit::Stream_reader< Istream_type, Value_type > , utility::json_spirit::Stream_reader_thrower< Istream_type, Value_type >
• readsome() : utility::io::icstream , utility::io::irstream , utility::io::izstream
• real_eigenvalues() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• real_eigenvectors() : numeric::linear_algebra::GeneralizedEigenSolver< _MatrixType >
• RealOption() : utility::options::RealOption
• RealOptionKey() : utility::options::RealOptionKey
• RealVectorOption() : utility::options::RealVectorOption
• RealVectorOptionKey() : utility::options::RealVectorOptionKey
• receive() : basic::message_listening::DbMoverMessageListener , basic::message_listening::MessageListener
• receive_char_from_node() : utility::SimulateMPI
• receive_double_from_node() : utility::SimulateMPI
• receive_doubles_from_node() : utility::SimulateMPI
• receive_integer_from_anyone() : utility::SimulateMPI
• receive_integer_from_node() : utility::SimulateMPI
• receive_integers_from_node() : utility::SimulateMPI
• receive_linkunits_from() : utility::signals::SignalHub< ResultType, Signal >
• receive_string_from_node() : utility::SimulateMPI
• receive_tokens_from() : utility::signals::TokenHub< ResultType, Signal >
• recent_history_queue() : utility::recent_history_queue
• reconstruct_gradient() : Solver
• record() : numeric::MultiDimensionalHistogram
• ReferenceCount() : utility::pointer::ReferenceCount
• refuse_unexpected_files() : utility::io::FileContentsMap
• register_string() : utility::Factory< T >
• register_tracer() : basic::Tracer
• Registrant() : utility::factory::Registrant< typename >
• registry() : utility::factory::Factory< typename >
• relative() : utility::file::FileName , utility::file::PathName
• release_buffer() : utility::signals::BufferedSignalHub< ResultType, Signal >
• release_file() : utility::io::mpi_stream::basic_mpi_ostreambase< Elem, Tr, ElemA, ByteT, ByteAT >
• remainder() : numeric::RemainderSelector< T, bool > , numeric::RemainderSelector< T, true >
• remove() : utility::factory::Factory< typename >
• Remove() : utility::graph::RingDetection< Graph >
• remove() : utility::in_place_list< T > , utility::keys::KeyLookup< K >
• remove_back() : utility::vectorL< SSize, T, A >
• remove_center_of_mass() : numeric::alignment::QCP_Kernel< Real >
• remove_input_file() : utility::Inline_File_Provider
• remove_invalid() : utility::signals::SignalHub< ResultType, Signal >
• rend() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• replace_col() : numeric::MathMatrix< T >
• replace_layer() : numeric::MathNTensor< T > , numeric::MathTensor< T >
• replace_row() : numeric::MathMatrix< T >
• Report() : basic::gpu::Timer
• request() : basic::message_listening::DbMoverMessageListener , basic::message_listening::MessageListener
• request_by_name() : basic::sampling::orientations::QuaternionGridManager
• request_by_radius() : basic::sampling::orientations::QuaternionGridManager
• request_by_size() : basic::sampling::orientations::QuaternionGridManager
• request_file() : utility::Inline_File_Provider_Hook
• reserve() : utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T >
• reserve_destination_size() : utility::subset_mapping
• ReservoirSampler() : numeric::random::ReservoirSampler< T >
• Reset() : basic::gpu::Timer
• reset() : numeric::geometry::BoundingBox< typename > , numeric::random::WeightedReservoirSampler< T >
• reset_all_flags() : numeric::ClusteringTreeNode
• reset_counts() : numeric::MultiDimensionalHistogram
• reset_coval() : utility::heap
• reset_state() : utility::io::mpi_stream::basic_mpi_streambuf< Elem, Tr, ElemA, ByteT, ByteAT >
• resi() : numeric::geometry::hashing::Ball , numeric::geometry::hashing::xyzStripeHash
• ResidueChainVectorOption() : utility::options::ResidueChainVectorOption
• ResidueChainVectorOptionKey() : utility::options::ResidueChainVectorOptionKey
• resize() : basic::datacache::DataCache< Data > , numeric::fourier::kiss_fft_state , numeric::fourier::kiss_fftnd_state , numeric::fourier::kiss_fftndr_state , numeric::fourier::kiss_fftr_state , numeric::random::WeightedSampler , utility::in_place_list< T > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyVector< K, T > , utility::keys::SmallKeyVector< K, T >
• resize_counts() : numeric::MultiDimensionalHistogram
• resnum_and_chain() : utility::options::ResidueChainVectorOption
• resource_description() : basic::resource_manager::fallback_configuration::NativeFallbackConfigurationCreator , basic::resource_manager::FallbackConfigurationCreator
• ResourceLoaderFactory() : basic::resource_manager::ResourceLoaderFactory
• ResourceLoaderRegistrator() : basic::resource_manager::ResourceLoaderRegistrator< T >
• ResourceLocator() : basic::resource_manager::ResourceLocator
• ResourceLocatorFactory() : basic::resource_manager::ResourceLocatorFactory
• ResourceLocatorRegistrator() : basic::resource_manager::ResourceLocatorRegistrator< T >
• ResourceManager() : basic::resource_manager::ResourceManager
• ResourceManagerFactory() : basic::resource_manager::ResourceManagerFactory
• ResourceManagerRegistrator() : basic::resource_manager::ResourceManagerRegistrator< T >
• ResourceOptions() : basic::resource_manager::ResourceOptions
• ResourceOptionsFactory() : basic::resource_manager::ResourceOptionsFactory
• ResourceOptionsRegistrator() : basic::resource_manager::ResourceOptionsRegistrator< T >
• rest_expression_token() : numeric::expression_parser::ArithmeticASTRestExpression
• rest_term_token() : numeric::expression_parser::ArithmeticASTRestTerm
• restoreState() : numeric::random::mt19937_RG , numeric::random::RandomGenerator , numeric::random::standard_RG , numeric::random::uniform_RG
• restrict_access() : utility::options::Option
• return_file_callback() : utility::Inline_File_Provider_Hook
• right() : numeric::ClusteringTreeNode
• right_child() : numeric::kdtree::KDNode
• right_multiply_by() : numeric::Quaternion< typename > , numeric::xyzMatrix< typename >
• right_multiply_by_inverse_of() : numeric::Quaternion< typename >
• right_multiply_by_transpose() : numeric::xyzMatrix< typename >
• right_transform_by() : numeric::BodyPosition< typename >
• right_transform_by_inverse_of() : numeric::BodyPosition< typename >
• RingDetection() : utility::graph::RingDetection< Graph >
• RingEdgeAnnotationVisitor() : utility::graph::RingEdgeAnnotationVisitor< Graph, EdgeMap, PathMap >
• RingSizeVisitor() : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• RmsData() : numeric::model_quality::RmsData
• roc_curve() : numeric::RocCurve
• RocCurve() : numeric::RocCurve
• RocPoint() : numeric::RocPoint
• root() : numeric::kdtree::KDTree
• root1() : numeric::Polynomial_1d
• root2() : numeric::Polynomial_1d
• rot() : numeric::xyzTransform< typename >
• rot_deg() : numeric::xyzTransform< typename >
• rotation_angle() : numeric::xyzTransform< typename >
• rotation_angle_degrees() : numeric::xyzTransform< typename >
• rotation_axis() : numeric::xyzTransform< typename >
• rotation_cosine() : numeric::xyzTransform< typename >
• rotation_matrix() : basic::sampling::orientations::Quaternion , numeric::HomogeneousTransform< T >
• rotation_sine() : numeric::xyzTransform< typename >
• row() : numeric::xyzMatrix< typename >
• row_x() : numeric::xyzMatrix< typename >
• row_y() : numeric::xyzMatrix< typename >
• row_z() : numeric::xyzMatrix< typename >
• RowData() : basic::database::insert_statement_generator::RowData< T >
• RowDataBase() : basic::database::insert_statement_generator::RowDataBase
• RowPointers() : numeric::RowPointers< T >
• rows() : numeric::xyzMatrix< typename >
• rows_constructor() : numeric::xyzMatrix< typename >
• RowsPointer() : numeric::RowsPointer< T >
• RowVectors() : numeric::RowVectors< T >
• rt6() : numeric::xyzTransform< typename >
• run_decomp_svd() : basic::svd::SVD_Solver
• run_score_svd_on_matrix() : basic::svd::SVD_Solver
• run_score_svd_without_solving() : basic::svd::SVD_Solver
• run_solve_svd() : basic::svd::SVD_Solver