- e -

• E_ : core::scoring::methods::carbohydrates::SugarBackboneEnergy
• E_elec_ : core::scoring::FACTSResidueInfo
• E_solv_ : core::scoring::FACTSResidueInfo
• E_solv_pair_ : core::scoring::FACTSResidueInfo
• E_solv_self_ : core::scoring::FACTSResidueInfo
• edge1 : core::pose::rna::BasePair
• edge2 : core::pose::rna::BasePair
• edge_ : core::graph::EdgeListElement , core::scoring::rna::data::RNA_Datum
• edge_count : core::kinematics::FoldTree
• edge_index_ : core::pack::interaction_graph::DoubleLazyEdge
• edge_iter_ : core::scoring::constraints::CstResNeighbConstIterator , core::scoring::constraints::CstResNeighbIterator
• edge_list_ : core::graph::Graph , core::kinematics::FoldTree , core::pack::interaction_graph::BackgroundNode< V, E, G >
• edge_list_element_pool_ : core::graph::EdgeList , core::graph::Graph
• edge_matrix_ptrs_ : core::pack::interaction_graph::DensePDNode , core::pack::interaction_graph::FASTERNode , core::pack::interaction_graph::LazyNode , core::pack::interaction_graph::PDNode
• edge_pool_ : core::graph::Graph
• edge_reweighters_ : core::pack::task::IGEdgeReweightContainer
• edge_vector_ : core::pack::interaction_graph::BackgroundNode< V, E, G >
• edge_vector_up_to_date_ : core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::NodeBase
• edge_weight_ : core::pack::interaction_graph::EdgeBase
• edgeList_ : core::sequence::SequenceCoupling
• edgePots_ : core::sequence::SequenceCoupling
• eeval_ : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
• effectiveB : core::scoring::electron_density::ElectronDensity
• efforigin : core::scoring::electron_density::ElectronDensity
• egen_ : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
• Ei_ : core::scoring::FACTSResidueInfo
• EIG_ : core::scoring::ResidualDipolarCoupling
• eit_ : core::fragment::ConstantLengthFragSetIterator_
• elec_die_ : core::scoring::methods::EnergyMethodOptions
• elec_group_file_ : core::scoring::methods::EnergyMethodOptions
• elec_max_dis_ : core::scoring::methods::EnergyMethodOptions
• elec_min_dis : core::init::pre_talaris_2013_behavior_settings
• elec_min_dis_ : core::scoring::methods::EnergyMethodOptions
• elec_no_dis_dep_die_ : core::scoring::methods::EnergyMethodOptions
• elec_sigmoidal_D0_ : core::scoring::methods::EnergyMethodOptions
• elec_sigmoidal_D_ : core::scoring::methods::EnergyMethodOptions
• elec_sigmoidal_die_ : core::scoring::methods::EnergyMethodOptions
• elec_sigmoidal_S_ : core::scoring::methods::EnergyMethodOptions
• elecF2_ : core::scoring::FACTSResidueInfo
• electron_configuration_ : core::chemical::Element
• electrons_ : core::chemical::ElectronConfiguration
• element : core::io::pdb::AtomInformation
• element_ : core::chemical::Atom , core::chemical::AtomType , core::chemical::Element , core::chemical::sdf::MolFileIOAtom , core::graph::EdgeListConstIterator , core::graph::EdgeListIterator
• element_index_ : core::chemical::ElementSet
• element_set_ : core::chemical::gasteiger::GasteigerAtomTypeSet
• element_set_tag_ : core::chemical::ResidueLoaderOptions
• element_sets_ : core::chemical::ChemicalManager
• element_type_ : core::chemical::gasteiger::GasteigerAtomTypeData
• elements_ : core::chemical::ElementSet , core::chemical::ResidueType , core::chemical::ResidueTypeSet
• elt_ : core::scoring::electron_density::poseCoord
• emap_ : core::scoring::etable::ResResEnergyInvoker< Evaluator >
• empty_list : core::conformation::symmetry::SymmetryInfo
• empty_list_ : core::chemical::AutomorphismIterator
• empty_residue_list_ : core::chemical::ResidueTypeSet
• empty_rsdcst_ : core::scoring::constraints::ConstraintSet
• end : core::fragment::picking_old::concepts::Extent< PageIterator > , core::io::pdb::Field
• end1_ : core::scoring::dssp::StrandPairing
• end2_ : core::scoring::dssp::StrandPairing
• end_ : core::conformation::membrane::Span , core::fragment::Frame , core::graph::EdgeList , core::io::serialization::BUFFER , core::scoring::ResRangePredicate
• energies_ : core::pose::Pose
• energies_are_outdated_ : core::pose::metrics::EnergyDependentCalculator , core::pose::metrics::PoseMetricContainer
• energies_not_yet_computed_ : core::scoring::EnergyEdge
• energies_updated_since_last_prep_for_simA_ : core::pack::interaction_graph::DensePDEdge , core::pack::interaction_graph::DoubleDensePDEdge , core::pack::interaction_graph::FASTEREdge , core::pack::interaction_graph::PDEdge
• energy_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::scmin::SidechainStateAssignment , core::scoring::hbonds::HBond
• energy_array_pool_ : core::scoring::EnergyGraph
• energy_computed_ : core::scoring::constraints::ConstraintEdge
• energy_cut_ : core::import_pose::pose_stream::SilentFilePoseInputStream
• ENERGY_DELTA : core::pack::dunbrack::SingleResidueDunbrackLibrary
• energy_edge_pool_ : core::scoring::EnergyGraph
• energy_graph_ : core::scoring::Energies
• energy_method_options_ : core::scoring::methods::FreeDOF_Energy , core::scoring::ScoreFunction , core::scoring::ScoreFunctionInfo
• energy_minima_conformers_ : core::chemical::RingConformerSet
• energy_minimum_conformer_ : core::chemical::RingConformerSet
• energy_names_ : core::io::silent::EnergyNames
• energy_obs_hub_ : core::pose::Pose
• energy_state_ : core::scoring::Energies , core::scoring::methods::PBLifetimeCache
• energy_sum_group_membership_ : core::pack::interaction_graph::InteractionGraphBase
• energy_top_ : core::pack::annealer::MultiCoolAnnealer
• enlarge_h_lj_wdepth : core::scoring::etable::EtableOptions
• enlarge_h_lj_wdepth_ : core::scoring::etable::Etable
• entropy_ : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::RotamerLibraryScratchSpace , core::scoring::methods::ProQ_Energy
• entry_2_resid_ : core::scoring::trie::CPDataCorrespondence
• enumeration_shell_ : core::scoring::FACTSResidueInfo
• env_ : core::scoring::SmoothEnvPairPotential
• env_id_ : core::environment::DofPassport
• env_log_ : core::scoring::EnvPairPotential
• env_pair_potential_ : core::scoring::ScoringManager
• envdata_ : core::scoring::methods::EnvSmoothEnergy
• envsmooth_zero_negatives_ : core::scoring::methods::EnergyMethodOptions
• envsplines_ : core::scoring::CenRotEnvPairPotential
• Ep : core::scoring::GenBornPotential
• ep_sasa_for_djs_node_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• eps : core::optimization::DFPMinConvergedFractional
• epsilon : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• epsilon_ : core::scoring::methods::PoissonBoltzmannEnergy
• epsilon_atom_names_ : core::scoring::dna::DNATorsionPotential
• epsilon_components_ : core::scoring::dna::DNATorsionPotential
• epsilon_north_potential_ : core::scoring::rna::RNA_TorsionPotential
• epsilon_south_potential_ : core::scoring::rna::RNA_TorsionPotential
• epsilonmax : core::pose::rna::RNA_SuiteName
• epsilonmin : core::pose::rna::RNA_SuiteName
• eq_type_ : core::scoring::FACTSPotential
• error : core::scoring::sc::ShapeComplementarityCalculatorException
• error_out_on_complex_cycles_ : core::scoring::loop_graph::LoopGraph
• esEnergy : core::scoring::APBSResult
• esolvE_ : core::scoring::FACTSResidueInfo
• etable_ : core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::membrane::FaMPSolvEnergy , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_BallEnergy , core::scoring::methods::LK_hack , core::scoring::rna::RNA_LJ_BaseEnergy
• etable_bins_per_A2_ : core::scoring::etable::TableLookupEvaluator , core::scoring::methods::LK_BallEnergy
• etable_disbins : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• etable_evaluator_ : core::scoring::methods::LK_PolarNonPolarEnergy , core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
• etable_options_ : core::scoring::methods::EnergyMethodOptions
• etable_type : core::scoring::etable::EtableOptions
• etables_by_options_ : core::scoring::ScoringManager
• EV_ : core::scoring::ResidualDipolarCoupling
• eval_res_ : core::scoring::methods::GoapEnergy
• eval_tuple_ : core::scoring::hbonds::HBond
• eval_type_ : core::scoring::hbonds::HBEvalTuple
• eval_types_ : core::pack::interaction_graph::OnTheFlyEdge , core::pack::interaction_graph::SymmOnTheFlyEdge
• evaluator_ : core::scoring::etable::ResResEnergyInvoker< Evaluator > , core::scoring::geometric_solvation::ContextDependentGeometricSolEnergy , core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy
• evdw : core::scoring::packstat::CavityBall
• events_ : core::scoring::packstat::Slice
• Ew : core::scoring::GenBornPotential
• ex1_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_ , core::scoring::motif::Xfrag
• ex1_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex1aro_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex1aro_exposed_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex1aro_exposed_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex1aro_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex2_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_ , core::scoring::motif::Xfrag
• ex2_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex2aro_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex2aro_exposed_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex2aro_exposed_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex2aro_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex3_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_ , core::scoring::motif::Xfrag
• ex3_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex4_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_ , core::scoring::motif::Xfrag
• ex4_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• ex_chi_steps : core::pack::dunbrack::ChiSet
• ex_cutoff_ : core::pack::task::EX_CUTOFF
• exact_occ_include_Hbond_contribution_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• exact_occ_pairwise_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• exact_occ_pairwise_by_res_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• exact_occ_self_res_occ_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• exact_occ_skip_Hbonders_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• exact_occ_split_between_res_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
• ExactDerivatives : core::scoring::electron_density::ElectronDensity
• exclude_DNA_DNA_ : core::scoring::elec::FA_ElecEnergy , core::scoring::elec::FA_GrpElecEnergy , core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::hbonds::HBondOptions , core::scoring::methods::EnergyMethodOptions , core::scoring::methods::FACTSEnergy , core::scoring::methods::GenBornEnergy
• exclude_intra_res_protein_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::hbonds::HBondOptions , core::scoring::methods::EnergyMethodOptions
• exclude_intra_res_RNA_ : core::scoring::hbonds::HBondOptions
• exclude_monomer_ : core::scoring::elec::FA_ElecEnergy , core::scoring::elec::FA_GrpElecEnergy
• exclude_monomer_fa_elec_ : core::scoring::methods::EnergyMethodOptions
• exclude_polar_all_in_hsasa_ : core::scoring::sasa::SasaCalc
• exclude_protein_protein_ : core::scoring::elec::FA_ElecEnergy , core::scoring::elec::FA_GrpElecEnergy
• exclude_protein_protein_fa_elec_ : core::scoring::methods::EnergyMethodOptions
• exclude_self_hbonds_ : core::scoring::hbonds::HBondOptions
• excluded_ : core::scoring::ExcludedResPredicate
• exdna_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• exhphobe_index_ : core::pack::interaction_graph::exposed_hydrophobic_data
• exit_if_missing_heavy_atoms_ : core::io::pdb::FileDataOptions
• EXP_chem_shift_data_list_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• exp_param_ : core::scoring::func::MixtureFunc
• exp_shift : core::scoring::rna::chemical_shift::ChemicalShiftData
• exp_val_ : core::scoring::func::SplineFunc
• expand_st_chi2sampling : core::init::pre_talaris_2013_behavior_settings
• experimental_technique_in_progress_ : core::io::pdb::HeaderInformation
• experimental_techniques_ : core::io::pdb::HeaderInformation
• expid_ : core::scoring::RDC
• explicit_radii_set_ : core::scoring::sasa::SasaCalc
• exposed_radius : core::scoring::packstat::CavityBall
• exprdc_ : core::scoring::ResidualDipolarCoupling
• extent_begin : core::fragment::picking_old::vall::scores::VallFragmentScore
• extent_end : core::fragment::picking_old::vall::scores::VallFragmentScore
• external_coordinate_residues_changed_ : core::kinematics::AtomTree
• externally_required_context_graphs_ : core::scoring::Energies
• extra_cut_off_interaction_ : core::scoring::FACTSPotential
• extra_cut_off_self_ : core::scoring::FACTSPotential
• extra_parameter_indices_ : core::chemical::AtomTypeSet
• extra_parameters_ : core::chemical::AtomType
• extrachi_cutoff_ : core::pack::task::operation::ExtraChiCutoff , core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
• extrapolated_slope : core::scoring::etable::ExtraQuadraticRepulsion
• extrasamples_ : core::chemical::AddProtonChi