Here is a list of all class members with links to the classes they belong to:
- x -
- x()
: core::fragment::BBTorsionSRFD
, core::fragment::picking_old::vall::VallResidue
, core::io::pdb::AtomInformation
, core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
, core::scoring::packing::Ball
, core::scoring::packstat::Circle
, core::scoring::packstat::Event
, core::scoring::packstat::Point
, core::scoring::packstat::SimplePDB_Atom
, core::scoring::PQR
, core::sequence::Cell
 
- x0()
: core::scoring::func::CircularHarmonicFunc
, core::scoring::func::FlatHarmonicFunc
, core::scoring::func::HarmonicFunc
, core::scoring::func::MinMultiHarmonicFunc
, core::scoring::func::SigmoidFunc
, core::scoring::func::SquareWell2Func
, core::scoring::func::SquareWellFunc
, core::scoring::func::TopOutFunc
 
- x0_
: core::scoring::func::AmberPeriodicFunc
, core::scoring::func::CharmmPeriodicFunc
, core::scoring::func::CircularHarmonicFunc
, core::scoring::func::CircularPowerFunc
, core::scoring::func::FlatHarmonicFunc
, core::scoring::func::HarmonicFunc
, core::scoring::func::IdentityFunc
, core::scoring::func::KarplusFunc
, core::scoring::func::MinMultiHarmonicFunc
, core::scoring::func::PeriodicFunc
, core::scoring::func::SigmoidFunc
, core::scoring::func::SquareWell2Func
, core::scoring::func::SquareWellFunc
, core::scoring::func::TopOutFunc
 
- x_
: core::fragment::picking_old::vall::VallResidue
, core::scoring::electron_density::poseCoord
 
- x_middle_
: core::scoring::func::LinearPenaltyFunction
 
- x_range()
: core::scoring::func::SquareWell2Func
 
- x_range_
: core::scoring::func::SquareWell2Func
 
- X_RAY_DIFFRACTION
: core::io::pdb::HeaderInformation
 
- xbin_
: core::scoring::func::CircularGeneral1D_Func
 
- xC_
: core::scoring::func::CircularSigmoidalFunc
 
- xd()
: core::scoring::methods::GoapEnergy
 
- xd_
: core::scoring::methods::GoapEnergy
 
- Xdim_
: core::scoring::packstat::Octree2D
 
- xform()
: core::scoring::motif::ResPairMotif
 
- xform_score_BB_PH_
: core::scoring::motif::MotifHashManager
 
- xform_score_BB_PO_
: core::scoring::motif::MotifHashManager
 
- xform_score_frags_
: core::scoring::motif::MotifHashManager
 
- xform_score_PH_PO_
: core::scoring::motif::MotifHashManager
 
- xform_scores_BB_BB_
: core::scoring::motif::MotifHashManager
 
- xform_scores_SC_BB_
: core::scoring::motif::MotifHashManager
 
- xform_scores_SC_SC_
: core::scoring::motif::MotifHashManager
 
- XformScore()
: core::scoring::motif::XformScore
 
- Xfrag()
: core::scoring::motif::Xfrag
 
- XfragMap
: core::scoring::motif::XfragSet
 
- xfragmap_
: core::scoring::motif::XfragSet
 
- XfragSet()
: core::scoring::motif::XfragSet
 
- Xfres()
: core::scoring::motif::Xfres
 
- xfres_
: core::scoring::motif::XfragSet
 
- XH_cutoff_
: core::scoring::NeighborList
 
- XH_cutoff_wide_
: core::scoring::NeighborList
 
- xhi
: core::scoring::etable::ExtraQuadraticRepulsion
 
- xlab()
: core::sequence::DP_Matrix
 
- xlabels_
: core::sequence::DP_Matrix
 
- xlo
: core::scoring::etable::ExtraQuadraticRepulsion
 
- xmin_
: core::scoring::func::CircularGeneral1D_Func
 
- xn()
: core::scoring::methods::GoapEnergy
 
- xn_
: core::scoring::methods::GoapEnergy
 
- xnum_points()
: core::scoring::geometric_solvation::GridInfo
 
- xnum_points_
: core::scoring::geometric_solvation::GridInfo
 
- xorigin()
: core::scoring::geometric_solvation::GridInfo
 
- xorigin_
: core::scoring::geometric_solvation::GridInfo
 
- xsel()
: core::io::rna::RDAT
 
- xsel_
: core::io::rna::RDAT
 
- xsel_refine()
: core::io::rna::RDAT
 
- xsel_refine_
: core::io::rna::RDAT
 
- xstep()
: core::scoring::geometric_solvation::GridInfo
 
- xstep_
: core::scoring::geometric_solvation::GridInfo
 
- XtalMLEnergy()
: core::scoring::cryst::XtalMLEnergy
 
- XtalMLEnergyCreator()
: core::scoring::cryst::XtalMLEnergyCreator
 
- XX_cutoff_
: core::scoring::NeighborList
 
- XX_cutoff_wide_
: core::scoring::NeighborList
 
- xx_init()
: core::optimization::MinimizerOptions
 
- xx_init_
: core::optimization::MinimizerOptions
 
- xyz()
: core::chemical::ICoorAtomID
, core::conformation::Atom
, core::conformation::Conformation
, core::conformation::orbitals::OrbitalXYZCoords
, core::conformation::PointGraphVertexData
, core::conformation::Residue
, core::io::pdb::ResidueInformation
, core::kinematics::AtomTree
, core::kinematics::tree::Atom
, core::kinematics::tree::Atom_
, core::pose::MiniPose
, core::pose::Pose
, core::scoring::FACTSResidueInfo
, core::scoring::func::FourPointsFunc
, core::scoring::hbonds::hbtrie::HBAtom
, core::scoring::packing::Ball
, core::scoring::packstat::CavityBall
, core::scoring::packstat::SimplePDB_Atom
, core::scoring::packstat::Sphere
, core::scoring::vdwaals::VDWAtom
 
- xyz2index_in_cell()
: core::scoring::electron_density_atomwise::ElectronDensityAtomwise
 
- xyz_
: core::conformation::Atom
, core::conformation::orbitals::OrbitalXYZCoords
, core::conformation::PointGraphVertexData
, core::scoring::FACTSResidueInfo
, core::scoring::hbonds::hbtrie::HBAtom
, core::scoring::packing::Ball
, core::scoring::packstat::CavityBall
, core::scoring::vdwaals::VDWAtom
 
- xyz_coords_need_updating_
: core::kinematics::AtomTree
 
- XYZ_Func
: core::scoring::constraints::SequenceProfileConstraint
 
- xyz_local_
: core::scoring::methods::WaterBuilder
 
- xyz_moved_
: core::conformation::Conformation
 
- xyz_obs_hub_
: core::conformation::Conformation
 
- xyz_target()
: core::scoring::constraints::LocalCoordinateConstraint
 
- xyz_target_
: core::scoring::constraints::CoordinateConstraint
, core::scoring::constraints::LocalCoordinateConstraint
 
- xyza_
: core::scoring::TMscore
 
- xyzb_
: core::scoring::TMscore
 
- XYZEvent
: core::conformation::Conformation
, core::conformation::signals::XYZEvent
 
- xyzStripeHashPose()
: core::pose::xyzStripeHashPose