util.cc File Reference

#include <protocols/antibody/constraints/util.hh>
#include <core/conformation/Residue.hh>
#include <core/id/AtomID.hh>
#include <core/scoring/constraints/Constraint.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <numeric/conversions.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/database/open.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <iostream>
#include <fstream>
#include <cctype>
#include <boost/algorithm/string.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::constraints

Functions
bool	protocols::antibody::constraints::cdr_has_res_constraints (AntibodyInfoCOP ab_info, core::pose::Pose &pose, CDRNameEnum const cdr, std::string const constraint_type)
	Check if all residues already have a specific constraint type. Useful for coordinate and dihedral constraints. More...
void	protocols::antibody::constraints::add_harmonic_dihedral_cst_general (AntibodyInfoCOP ab_info, core::pose::Pose &pose, CDRNameEnum const cdr, core::Real phi_sd_deg=16.0, core::Real psi_sd_deg=16.0)
	Add dihedral constraints to CDR with mean being the current phi/psi. More...

Variables
static basic::Tracer	TR ("antibody.constraints.util")

Variable Documentation

basic::Tracer TR("antibody.constraints.util")

static