AntibodyDesignProtocol.cc File Reference

Handles the Antibody Design Protocol. More...

#include <protocols/antibody/design/AntibodyDesignProtocol.hh>
#include <protocols/antibody/design/AntibodyDesignProtocolCreator.hh>
#include <protocols/antibody/database/AntibodyDatabaseManager.hh>
#include <protocols/antibody/design/AntibodyDesignMover.hh>
#include <protocols/antibody/design/util.hh>
#include <protocols/antibody/clusters/util.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/util.hh>
#include <protocols/antibody/snugdock/SnugDock.hh>
#include <protocols/antibody/snugdock/SnugDockProtocol.hh>
#include <protocols/antibody/AntibodyEnum.hh>
#include <protocols/antibody/constraints/util.hh>
#include <protocols/antibody/constraints/ParatopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/ParatopeEpitopeSiteConstraintMover.hh>
#include <protocols/antibody/constraints/CDRDihedralConstraintMover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/jd2/PDBJobOutputter.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/simple_moves/DeleteChainsMover.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <utility/exit.hh>
#include <utility/tag/Tag.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::design

Functions
static thread_local basic::Tracer	TR ("protocols.antibody.design.AntibodyDesignProtocol")

Detailed Description

Handles the Antibody Design Protocol.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.antibody.design.AntibodyDesignProtocol"  )

static