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Rosetta
2015.38
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Rosetta
2015.38
|
Classes | |
| class | ATOMinfo |
Functions | |
| def | load |
| def | partner |
| def | coordinates |
| def | backbone |
| def | CA |
| def | hbond_record |
| def | vector |
| def | length |
| def | unit_vector |
| def | dot_product |
| def | cross_product |
| def | angle |
| def | scalar_triple_product |
| def | PhiPsi |
| def | SecondaryStructure |
| def | MAIN |
Variables | |
| list | pdb = argv[1] |
| def PhiPsi.angle | ( | vector1, | |
| vector2 | |||
| ) |
References dot_product(), length(), and unit_vector().
Referenced by PhiPsi().
| def PhiPsi.backbone | ( | pdb | ) |
Referenced by PhiPsi().
| def PhiPsi.CA | ( | pdb | ) |
Referenced by MAIN(), and SecondaryStructure().
| def PhiPsi.coordinates | ( | pdb | ) |
Referenced by PhiPsi().
| def PhiPsi.cross_product | ( | vector1, | |
| vector2 | |||
| ) |
Referenced by PhiPsi(), and scalar_triple_product().
| def PhiPsi.dot_product | ( | vector1, | |
| vector2 | |||
| ) |
Referenced by angle(), and scalar_triple_product().
| def PhiPsi.hbond_record | ( | pdb | ) |
References ObjexxFCL.len(), and utility.split().
Referenced by SecondaryStructure().
| def PhiPsi.length | ( | vector | ) |
Referenced by angle().
| def PhiPsi.load | ( | file | ) |
References basic::database.open(), and ObjexxFCL.strip().
Referenced by MAIN(), PhiPsi(), and SecondaryStructure().
| def PhiPsi.MAIN | ( | pdb | ) |
References CA(), ObjexxFCL.len(), load(), basic::database.open(), partner(), and SecondaryStructure().
| def PhiPsi.partner | ( | pdb | ) |
Referenced by MAIN(), PhiPsi(), and SecondaryStructure().
| def PhiPsi.PhiPsi | ( | pdb | ) |
References angle(), backbone(), coordinates(), cross_product(), ObjexxFCL.len(), load(), partner(), scalar_triple_product(), and vector().
| def PhiPsi.scalar_triple_product | ( | vector1, | |
| vector2, | |||
| vector3 | |||
| ) |
References cross_product(), and dot_product().
Referenced by PhiPsi().
| def PhiPsi.SecondaryStructure | ( | pdb | ) |
References ObjexxFCL.abs(), CA(), hbond_record(), ObjexxFCL.len(), load(), min(), and partner().
Referenced by MAIN().
| def PhiPsi.unit_vector | ( | vector, | |
| length | |||
| ) |
Referenced by angle().
| def PhiPsi.vector | ( | pointA, | |
| pointB | |||
| ) |
Referenced by PhiPsi().
| list PhiPsi.pdb = argv[1] |
Referenced by add_rosetta_options_0(), add_rosetta_options_1(), add_rosetta_options_10(), cs_rosetta_rna_pdb(), fill_optional_options(), main(), match_main(), output_filename(), output_packstat(), output_packstat_pdb(), basic::options.process(), rna_fullatom_minimize_test(), and PDB_IOBenchmark.setUp().
1.8.7