Here is a list of all file members with links to the files they belong to:

- p -

• p1_1 : zinc_heterodimer_design.cc
• p1_2 : zinc_heterodimer_design.cc
• p1_3 : zinc_heterodimer_design.cc
• p2 : zinc_heterodimer_design.cc
• pack_input : InterfaceAnalyzer.cc
• pack_min_runs : homodimer_design.cc
• pack_separated : InterfaceAnalyzer.cc
• packmin_unbound_pep() : pepspec.cc
• pair_repr() : _core__by_hand_beginning.cc , _utility__by_hand_beginning.cc
• PATH : test_carbohydrate_scoring.cc , test_CarbohydrateInfo.cc , test_CCD_loop_closure.cc
• PCT_THRESHOLD : validate_silent.cc
• PDB_IO_ : performance_benchmark.cc
• pdb_minimizer() : erraser_minimizer.cc
• pdb_to_silent_file() : swa_rna_util.cc
• pep_anchor() : pepspec.cc
• pep_begin() : pepspec.cc
• pep_chain() : pepspec.cc
• pep_coord_csts : pepspec.cc , pepspec_anchor_dock.cc
• pep_end() : pepspec.cc
• pep_jump() : pepspec.cc
• pep_phipsi_analysis() : pepspec.cc
• pep_rmsd_analysis() : pepspec.cc , pepspec_anchor_dock.cc
• PeptoidDesignMoverCOP : peptoid_design.cc
• PeptoidDesignMoverOP : peptoid_design.cc
• perturb_pep_bb() : pepspec.cc
• pi : bridgeObjects.cc
• pidegs : bridgeObjects.cc
• point : zinc1_homodimer_design.cc , zinc1_homodimer_setup.cc , zinc2_homodimer_design.cc , zinc2_homodimer_setup.cc
• POLY : Svm.hh
• Pose : supercharge.cc , zinc1_homodimer_design.cc , zinc2_homodimer_design.cc , zinc2_homodimer_setup.cc
• pose_setup() : recces_turner.cc
• PosePyObserverTesterFunction() : _pose__by_hand_beginning.cc
• poses_from_cmd_line() : score_aln.cc , fix_alignment_to_match_pdb.cc , partial_thread.cc , score_aln2.cc
• post_rebuild_bulge_assembly() : swa_rna_main.cc
• POSTGRES_ONLY : util.hh
• powi() : Svm.cc
• PP4x2_VECSIZE : dixon.cc
• PRECOMPUTED : Svm.hh
• predict_chem_map_test() : rna_predict_chem_map.cc
• prepare_threaded_model() : rna_thread.cc
• print_backtrace() : backtrace.hh
• print_ddgs() : ddg_monomer.cc
• print_pep_analysis() : pepspec.cc
• print_pep_csts() : pepspec_anchor_dock.cc
• print_seq_map() : score_aln2.cc , score_aln.cc
• print_string_stdout() : Svm.cc
• PRIu64 : mt19937.hh
• PRIx64 : mt19937.hh
• process_for_motifs() : extract_motifs.cc
• processRegions() : contactMap.cc
• PROF_START : prof.hh
• PROF_STOP : prof.hh
• prot_anchor() : pepspec.cc
• prot_begin() : pepspec.cc
• prot_chain() : pepspec.cc
• prot_end() : pepspec.cc
• proxy_const_assert : proxy_const_assert.hh
• PY_ARRAY_UNIQUE_SYMBOL : _utility__by_hand_beginning.cc
• py_xdec_ref() : _utility__by_hand_beginning.cc
• py_xinc_ref() : _utility__by_hand_beginning.cc
• PyAssert : PyAssert.hh
• pyexit_callback() : _utility__by_hand_beginning.cc
• pyrimidine_flip_trial() : erraser_minimizer.cc