Class for handling user debug/warnings/errors. Use instance of this class instead of 'std::cout' for all your regular io. Channel argument must be related to the location of the source file. For example if you create Tracer object in src/basic/scoring/myfile.cc, then channel must be something like 'src.basic.scoring.myfile'. More...

#include <Tracer.hh>

Inheritance diagram for basic::Tracer:

[legend]

Classes
class	TracerProxy
	Small inner class acting as a proxy to an object that hold it. More...

Public Types
typedef std::ostream *	OstreamPointer

Public Types inherited from utility::pointer::ReferenceCount
typedef platform::Size	Size

typedef platform::Size	size_type

Public Member Functions
	Tracer (std::string const &channel="", TracerPriority priority=t_info, bool muted_by_default=false)
	Create Tracer object with given channel and priority. More...

	Tracer (std::string const &channel, std::string const &channel_color, std::string const &channel_name_color="", TracerPriority priority=t_info, bool muted_by_default=false)
	Create Tracer object with channel color, channel name color and given channel and priority. More...

virtual	~Tracer ()

void	init (Tracer const &tr)
	re-init using data from another tracer object. More...

void	flush_all_channels ()
	flush tracer buffer and flush buffers of all sub-channels ie: Fatal, Error, Warning, Info, Debug, Trace More...

bool	visible () const
	Is this tracer currently visible?. More...

bool	visible (int priority) const
	is this tracer visible, if it used the given priority value? More...

int	priority () const
	get/set tracer priority level. More...

Tracer &	operator() (int priority)

void	priority (int priority)

std::string const &	channel () const

std::string const &	channel_color ()

void	channel_color (std::string const &color)

std::string const &	channel_name_color ()

void	channel_name_color (std::string const &color)

Public Member Functions inherited from basic::basic_otstream< CharT, Traits >
	basic_otstream ()

virtual	~basic_otstream ()

bool	is_flushed () const
	Return true if inner string buffer is empty. More...

Public Member Functions inherited from utility::pointer::ReferenceCount
	ReferenceCount ()
	Default constructor. More...

virtual	~ReferenceCount ()

Static Public Member Functions
static OstreamPointer &	final_stream ()
	set ios hook for final tracer stream (deafult is std::cout). More...

static void	set_new_final_stream (std::ostream *new_final_stream)

static void	set_default_final_stream ()

static void	set_ios_hook (otstreamOP tr, std::string const &monitoring_channels_list, bool raw=true)
	set ios hook for all tracer io operation. More...

static std::string const &	get_all_channels_string ()

static TracerOptions &	tracer_options ()
	get/set tracer options - global options for Tracer IO. More...

static bool	super_mute ()
	global super mute flag that allow to mute all io no matter what. More...

static void	super_mute (bool f)

static void	flush_all_tracers ()

static void	calculate_tracer_visibilities ()
	This function should be invoked after the options system has been initialized, so that the visibility for all tracers that have so far been constructed and have been waiting for the options system to be initialized can now have their visibility calculated. After this function completes, all newly-constructed Tracers will calculate their visibility in their constructors. Visibility is no longer be calculated on a just-in-time basis and stored in mutable data members. More...

Public Attributes
TracerProxy	Fatal
	channels with predefined priority levels. More...

TracerProxy	Error

TracerProxy	Warning

TracerProxy	Info

TracerProxy	Debug

TracerProxy	Trace

Static Public Attributes
static utility::CSI_Sequence	Reset

static utility::CSI_Sequence	Bold

static utility::CSI_Sequence	Underline

static utility::CSI_Sequence	Black

static utility::CSI_Sequence	Red

static utility::CSI_Sequence	Green

static utility::CSI_Sequence	Yellow

static utility::CSI_Sequence	Blue

static utility::CSI_Sequence	Magenta

static utility::CSI_Sequence	Cyan

static utility::CSI_Sequence	White

static utility::CSI_Sequence	bgBlack

static utility::CSI_Sequence	bgRed

static utility::CSI_Sequence	bgGreen

static utility::CSI_Sequence	bgYellow

static utility::CSI_Sequence	bgBlue

static utility::CSI_Sequence	bgMagenta

static utility::CSI_Sequence	bgCyan

static utility::CSI_Sequence	bgWhite

Protected Member Functions
virtual void	t_flush (std::string const &)
	overload member function. More...

Private Member Functions
void	init (std::string const &channel, std::string const &channel_color, std::string const &channel_name_color, TracerPriority priority, bool muted_by_default)
	init Tracer object with given parameters. This is a helper function to be called from various constructors More...

	Tracer (Tracer const &tr)
	copy constructor. More...

template<class out_stream >
void	prepend_channel_name (out_stream &sout, std::string const &str)

void	calculate_visibility ()
	calcualte visibility of the current object depending of the channel name and priority. More...

bool	visibility_calculated () const
	Adding this function to get around unused class data member warnings; you should never have to worry about whether the visibility for a Tracer has been calculated. More...

Static Private Member Functions
static bool	in (utility::vector1< std::string > const &, std::string const channel, bool strict)
	return true if channel is inside vector, some logic apply. More...

static bool	calculate_tracer_level (utility::vector1< std::string > const &v, std::string const ch, bool strict, int &res)
	calculate channel priority with hierarchy in mind. More...

static void	register_tracer (Tracer *tracer)
	Tracers must register themselves with the static array of all tracers so that they can be flushed en masse if need be. This function is thread safe. More...

static void	calculate_visibility (std::string const &channel, int priority, bool &visible, bool &muted, int &mute_level_, bool muted_by_default)

static void	safe_output (std::string const &)
	Output a message in a manner that is safe if the Tracers/output are poorly initialized. More...

static otstreamOP &	ios_hook ()
	link to Tracer like object where all output for selecting channels should go. More...

static bool &	ios_hook_raw_ ()
	should the ios_hook_ the raw output? More...

static bool &	super_mute_ ()
	global super mute flag that allow to mute all io no matter what. More...

Private Attributes
std::string	channel_
	Data members. More...

std::string	channel_color_
	default colors for tracer output and tracer channel-name string (ie color of string such as: 'core.pose:') More...

std::string	channel_name_color_

int	priority_
	channel output priority level More...

int	mute_level_
	channel muted priority level (above which level is channel muted), calculated using user suppied -level and -levels options More...

bool	visible_
	is channel visible? More...

bool	muted_
	is channel muted ? More...

bool	muted_by_default_
	is channel muted by default? More...

bool	begining_of_the_line_
	is current printing position a begining of the line? More...

bool	visibility_calculated_
	is channel visibility already calculated? More...

Static Private Attributes
static utility::vector1 < std::string >	monitoring_list_
	list of channels for which outout should be redirected. More...

static TracerOptions	tracer_options_
	global option collection for Tracer IO. More...

static bool	initial_tracers_visibility_calculated_

static int	mpi_rank_
	Mpi rank is this process More...

Friends
Tracer &	T (std::string const &, TracerPriority)
	T is special function for assign tracer property on the static object. More...

Detailed Description

Class for handling user debug/warnings/errors. Use instance of this class instead of 'std::cout' for all your regular io. Channel argument must be related to the location of the source file. For example if you create Tracer object in src/basic/scoring/myfile.cc, then channel must be something like 'src.basic.scoring.myfile'.

Definition at line 134 of file Tracer.hh.

Member Typedef Documentation

typedef std::ostream* basic::Tracer::OstreamPointer

Definition at line 174 of file Tracer.hh.

Constructor & Destructor Documentation

basic::Tracer::Tracer	(	std::string const &	channel = `""`,
		TracerPriority	priority = `t_info`,
		bool	muted_by_default = `false`
	)

Create Tracer object with given channel and priority.

Constructor of Tracer object. Since most of the Tracer object will be created as static - they Constuctor will be called before Option system is initialized. So we can't really calculate any vizibility or priority here. Such calculation should be done later, whe first IO operation happend.

Todo:: Default Tracer level should probably be modified to t_info here and in options defn.

Definition at line 205 of file Tracer.cc.

References init().

basic::Tracer::Tracer	(	std::string const &	channel,
		std::string const &	channel_color,
		std::string const &	channel_name_color = `""`,
		TracerPriority	priority = `t_info`,
		bool	muted_by_default = `false`
	)

Create Tracer object with channel color, channel name color and given channel and priority.

Definition at line 217 of file Tracer.cc.

References init().

basic::Tracer::~Tracer ( )

virtual

Definition at line 256 of file Tracer.cc.

References Debug, Error, Fatal, basic::TracerManager::get_instance(), Info, basic::basic_otstream< CharT, Traits >::is_flushed(), Trace, test.T850_SubClassing::v, and Warning.

basic::Tracer::Tracer ( Tracer const & tr )

private

copy constructor.

Functions

Member Function Documentation

bool basic::Tracer::calculate_tracer_level	(	utility::vector1< std::string > const &	v,
		std::string const	ch,
		bool	strict,
		int &	res
	)

staticprivate

calculate channel priority with hierarchy in mind.

Same as before but return integer value for matched channel or closest match (we asume that 'v' in levels format, ie like: <channel name>="">:level )

Definition at line 464 of file Tracer.cc.

References ObjexxFCL::len(), ObjexxFCL::lowercased(), app.pyrosetta_toolkit.modules.SQLPDB::s, safe_output(), amino_acids::size, utility::string2int(), utility::string_split(), basic::t_debug, basic::t_error, basic::t_fatal, basic::t_info, basic::t_trace, and basic::t_warning.

Referenced by calculate_visibility().

void basic::Tracer::calculate_tracer_visibilities ( )

static

This function should be invoked after the options system has been initialized, so that the visibility for all tracers that have so far been constructed and have been waiting for the options system to be initialized can now have their visibility calculated. After this function completes, all newly-constructed Tracers will calculate their visibility in their constructors. Visibility is no longer be calculated on a just-in-time basis and stored in mutable data members.

Definition at line 185 of file Tracer.cc.

References basic::TracerManager::get_instance(), test.T200_Scoring::ii, and initial_tracers_visibility_calculated_.

void basic::Tracer::calculate_visibility ( )

private

calcualte visibility of the current object depending of the channel name and priority.

Calculate visibility of current Tracer object and all of its proxies

Definition at line 355 of file Tracer.cc.

References basic::Tracer::TracerProxy::calculate_visibility(), channel_, Debug, Error, Fatal, Info, mute_level_, muted_, muted_by_default_, priority_, Trace, visibility_calculated_, visible_, and Warning.

Referenced by basic::Tracer::TracerProxy::calculate_visibility(), init(), and basic::T().

void basic::Tracer::calculate_visibility	(	std::string const &	channel,
		int	priority,
		bool &	visible,
		bool &	muted,
		int &	mute_level_,
		bool	muted_by_default
	)

staticprivate

Calculate visibility (static version) of current Tracer object using channel name and priority. result stored in 'muted' and 'visible'.

Definition at line 371 of file Tracer.cc.

References calculate_tracer_level(), in(), basic::TracerOptions::level, basic::TracerOptions::levels, utility::mpi_nprocs(), utility::mpi_rank(), mpi_rank_, basic::TracerOptions::muted, tracer_options_, basic::TracerOptions::unmuted, and visible().

std::string const& basic::Tracer::channel ( ) const

inline

Definition at line 200 of file Tracer.hh.

References channel_.

Referenced by init(), and basic::show_time().

std::string const& basic::Tracer::channel_color ( )

inline

Definition at line 202 of file Tracer.hh.

References channel_color_.

Referenced by init().

void basic::Tracer::channel_color ( std::string const & color )

inline

Definition at line 203 of file Tracer.hh.

References channel_color_.

std::string const& basic::Tracer::channel_name_color ( )

inline

Definition at line 205 of file Tracer.hh.

References channel_name_color_.

Referenced by init().

void basic::Tracer::channel_name_color ( std::string const & color )

inline

Definition at line 206 of file Tracer.hh.

References channel_name_color_.

Tracer::OstreamPointer & basic::Tracer::final_stream ( )

static

set ios hook for final tracer stream (deafult is std::cout).

Definition at line 73 of file Tracer.cc.

References utility::io::oc::cout.

Referenced by safe_output(), set_default_final_stream(), set_new_final_stream(), and t_flush().

void basic::Tracer::flush_all_channels ( )

flush tracer buffer and flush buffers of all sub-channels ie: Fatal, Error, Warning, Info, Debug, Trace

Definition at line 313 of file Tracer.cc.

References Debug, Error, Fatal, Info, Trace, test.T850_SubClassing::v, and Warning.

Referenced by main().

void basic::Tracer::flush_all_tracers ( )

static

Definition at line 168 of file Tracer.cc.

References basic::TracerManager::get_instance().

std::string const & basic::Tracer::get_all_channels_string ( )

static

Definition at line 106 of file Tracer.cc.

Referenced by t_flush().

bool basic::Tracer::in	(	utility::vector1< std::string > const &	v,
		std::string const	ch,
		bool	strict
	)

staticprivate

return true if channel is inside vector, some logic apply.

Check if string representing channel 'ch' is in vector<string> v. Return true if channel is in vector, false otherwise. Two mode of operation: Strict: strict==true - channels compared verbatim. Regular: strict==false - comparing with hierarchy in mind, ie: ch='basic.pose' v[0]='basic' –> will yield true.

Definition at line 437 of file Tracer.cc.

References app.pyrosetta_toolkit.modules.SQLPDB::s, and amino_acids::size.

Referenced by calculate_visibility(), and t_flush().

void basic::Tracer::init	(	std::string const &	channel,
		std::string const &	channel_color,
		std::string const &	channel_name_color,
		TracerPriority	priority,
		bool	muted_by_default
	)

private

init Tracer object with given parameters. This is a helper function to be called from various constructors

Definition at line 228 of file Tracer.cc.

References basic::TracerManager::all_tracers(), begining_of_the_line_, calculate_visibility(), channel(), channel_, channel_color(), channel_color_, channel_name_color(), channel_name_color_, basic::TracerManager::get_instance(), initial_tracers_visibility_calculated_, mute_level_, muted_, muted_by_default_, priority(), priority_, visibility_calculated_, and visible_.

Referenced by Tracer().

void basic::Tracer::init ( Tracer const & tr )

re-init using data from another tracer object.

Definition at line 290 of file Tracer.cc.

References begining_of_the_line_, calculate_visibility(), channel_, initial_tracers_visibility_calculated_, mute_level_, muted_, priority_, visibility_calculated_, and visible_.

otstreamOP & basic::Tracer::ios_hook ( )

staticprivate

link to Tracer like object where all output for selecting channels should go.

static data members

Definition at line 90 of file Tracer.cc.

Referenced by safe_output(), set_ios_hook(), and t_flush().

bool & basic::Tracer::ios_hook_raw_ ( )

staticprivate

should the ios_hook_ the raw output?

Definition at line 96 of file Tracer.cc.

Referenced by set_ios_hook(), and t_flush().

Tracer & basic::Tracer::operator() ( int priority )

Definition at line 333 of file Tracer.cc.

References priority().

template<class out_stream >

void basic::Tracer::prepend_channel_name	(	out_stream &	sout,
		std::string const &	str
	)

private

Write the contents of str to sout prepending the channel name on each line if the print_channel_name flag is set.

Definition at line 517 of file Tracer.cc.

References begining_of_the_line_, channel_, channel_color_, channel_name_color_, mpi_rank_, basic::TracerOptions::print_channel_name, Reset, app.pyrosetta_toolkit.modules.SQLPDB::s, utility::timestamp(), basic::TracerOptions::timestamp, and tracer_options_.

int basic::Tracer::priority ( ) const

inline

get/set tracer priority level.

Definition at line 196 of file Tracer.hh.

References priority_.

Referenced by init(), operator()(), and priority().

void basic::Tracer::priority ( int priority )

Definition at line 339 of file Tracer.cc.

References mute_level_, muted_, priority(), priority_, visibility_calculated_, and visible_.

static void basic::Tracer::register_tracer ( Tracer * tracer )

staticprivate

Tracers must register themselves with the static array of all tracers so that they can be flushed en masse if need be. This function is thread safe.

void basic::Tracer::safe_output ( std::string const & message )

staticprivate

Output a message in a manner that is safe if the Tracers/output are poorly initialized.

Definition at line 453 of file Tracer.cc.

References utility::io::oc::cerr, final_stream(), and ios_hook().

Referenced by calculate_tracer_level().

void basic::Tracer::set_default_final_stream ( )

static

Definition at line 84 of file Tracer.cc.

References utility::io::oc::cout, and final_stream().

void basic::Tracer::set_ios_hook	(	otstreamOP	tr,
		std::string const &	monitoring_channels_list,
		bool	raw = `true`
	)

static

set ios hook for all tracer io operation.

Parameters

monitoring_channels_list is space separated list of channels.

Set OStringStream object to which all Tracers output listed in the monitoring_channels_list should be copied. Note this copies the output of channels even if they are invisible or muted. When raw==false same as above above but gives the option get only the visible and unmuted tracers. It can be useful to get the raw output for applications like the comparing tracers, where the output should not change with command line parameters. It can be useful to get the non-raw output in applications like using the jd2 with MPI, where the output each job should match the output if it was run on a single processor.

Definition at line 595 of file Tracer.cc.

References ios_hook(), ios_hook_raw_(), monitoring_list_, utility::split(), and tr().

void basic::Tracer::set_new_final_stream ( std::ostream * new_final_stream )

static

Definition at line 79 of file Tracer.cc.

References final_stream().

static bool basic::Tracer::super_mute ( )

inlinestatic

global super mute flag that allow to mute all io no matter what.

Definition at line 212 of file Tracer.hh.

References super_mute_().

static void basic::Tracer::super_mute ( bool f )

inlinestatic

Definition at line 213 of file Tracer.hh.

References demo.D060_Folding::f, and super_mute_().

bool & basic::Tracer::super_mute_ ( )

staticprivate

global super mute flag that allow to mute all io no matter what.

Definition at line 114 of file Tracer.cc.

Referenced by super_mute(), and t_flush().

void basic::Tracer::t_flush ( std::string const & str )

protectedvirtual

overload member function.

Inform Tracer that is contents was modified, and IO is in order.

Reimplemented from basic::basic_otstream< CharT, Traits >.

Reimplemented in basic::MemTracer.

Definition at line 548 of file Tracer.cc.

References channel_, final_stream(), get_all_channels_string(), in(), initial_tracers_visibility_calculated_, ios_hook(), ios_hook_raw_(), monitoring_list_, super_mute_(), visibility_calculated_, and visible().

Referenced by basic::MemTracer::t_flush().

static TracerOptions& basic::Tracer::tracer_options ( )

inlinestatic

get/set tracer options - global options for Tracer IO.

Definition at line 209 of file Tracer.hh.

References tracer_options_.

bool basic::Tracer::visibility_calculated ( ) const

inlineprivate

Adding this function to get around unused class data member warnings; you should never have to worry about whether the visibility for a Tracer has been calculated.

Definition at line 307 of file Tracer.hh.

References visibility_calculated_.

bool basic::Tracer::visible ( ) const

inline

Is this tracer currently visible?.

Definition at line 190 of file Tracer.hh.

References visible_.

Referenced by calculate_visibility(), main(), basic::MemTracer::t_flush(), and t_flush().

bool basic::Tracer::visible ( int priority ) const

is this tracer visible, if it used the given priority value?

Definition at line 324 of file Tracer.cc.

References mute_level_, and muted_.