rna_helix.cc File Reference

#include <core/scoring/rms_util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/pose/annotated_sequence.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <protocols/stepwise/modeler/rna/helix/RNA_HelixAssembler.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/init/init.hh>
#include <core/io/pdb/pose_io.hh>
#include <utility/vector1.hh>
#include <utility/exit.hh>
#include <numeric/xyzVector.hh>
#include <ObjexxFCL/string.functions.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Go to the source code of this file.

Functions
void	rna_build_helix_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 180 of file rna_helix.cc.

References utility::io::oc::cout, yaml::dump(), basic::init(), utility::excn::EXCN_Base::msg(), my_main(), NEW_OPT, options, and PyMOL_demo::seq.

void* my_main

(

void *

)

Definition at line 166 of file rna_helix.cc.

References utility::options::OptionKeys::options::exit, options, and rna_build_helix_test().

Referenced by main().

void rna_build_helix_test

(

)

Definition at line 84 of file rna_helix.cc.

References yaml::dump(), ObjexxFCL::lead_zero_string_of(), local::nstruct, option, options, clean_pdb_keep_ligand::outfile, app.surface_docking.surface_docking::pose, app.pyrosetta_toolkit.modules.SQLPDB::s, PyMOL_demo::scorefxn, PyMOL_demo::seq, demo.D060_Folding::sequence, basic::options::silent, tag, utility::options::OptionKeys::options::user, utility_exit_with_message, and test.T200_Scoring::weights.

Referenced by my_main().