rna_minimize.cc File Reference

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/AtomID.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/rms_util.hh>
#include <basic/database/open.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <protocols/stepwise/setup/FullModelInfoSetupFromCommandLine.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/init/init.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/farna/setup/RNA_DeNovoPoseSetup.hh>
#include <protocols/farna/movers/RNA_Minimizer.hh>
#include <protocols/farna/options/RNA_MinimizerOptions.hh>
#include <protocols/farna/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/toolbox/AtomLevelDomainMap.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Go to the source code of this file.

Functions
void	rna_fullatom_minimize_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 279 of file rna_minimize.cc.

References utility::options::OptionCollection::add_relevant(), utility::io::oc::cout, basic::init(), utility::excn::EXCN_Base::msg(), my_main(), NEW_OPT, basic::options::option, options, contacts::pdb, and test.T200_Scoring::weights.

void* my_main

(

void *

)

Definition at line 268 of file rna_minimize.cc.

References utility::options::OptionKeys::options::exit, and rna_fullatom_minimize_test().

Referenced by main().

void rna_fullatom_minimize_test

(

)

Definition at line 85 of file rna_minimize.cc.

References app.surface_docking.surface_docking::constraints, utility::io::oc::cout, app.surface_docking.surface_docking::input, ContactMap::native, test.Workshop7test::native_pose, basic::options::option, options, contacts::pdb, make_symmdef_file_denovo::pos, app.surface_docking.surface_docking::pose, app.pyrosetta_toolkit.modules.tools.analysis::rmsd(), app.pyrosetta_toolkit.modules.SQLPDB::s, basic::options::silent, app.surface_docking.surface_docking::start_pose, tag, test.T220_AtomAtomPairEnergies::test_pose, utility::options::OptionKeys::options::user, and utility_exit_with_message.

Referenced by my_main().