super_aln.cc File Reference

#include <core/types.hh>
#include <devel/init.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/rms_util.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <utility/vector1.hh>
#include <utility/excn/Exceptions.hh>
#include <numeric/xyzVector.hh>
#include <core/sequence/util.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <core/pose/util.hh>
#include <core/pose/util.tmpl.hh>

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Functions
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Definition in file super_aln.cc.

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 55 of file super_aln.cc.

References utility::io::oc::cout, end, test.T200_Scoring::ii, devel::init(), utility::excn::EXCN_Base::msg(), option, options, test.T010_LoadPDB::pose2, demo.D010_Pose_structure::residues, app.pyrosetta_toolkit.modules.SQLPDB::s, and utility::options::OptionKeys::options::user.