scores Directory Reference

Directory dependency graph for scores:

Files
file	ABEGO_SS_Score.cc [code]
	scores a fragment by secondary structure similarity
file	ABEGO_SS_Score.hh [code]
	scores a fragment by secondary structure similarity
file	AdaptiveScoreHistogram.cc [code]
file	AdaptiveScoreHistogram.fwd.hh [code]
	AdaptiveScoreHistogram forward declaration.
file	AdaptiveScoreHistogram.hh [code]
	A very basic histogram to keep statistics of scores.
file	AmbigCSScore.cc [code]
	Object that scores a fragment by target-observed/vall-predicted chemical shift distances.
file	AmbigCSScore.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	AtomBasedConstraintsScore.cc [code]
file	AtomBasedConstraintsScore.fwd.hh [code]
	AtomBasedConstraintsScore forward declaration.
file	AtomBasedConstraintsScore.hh [code]
file	AtomPairConstraintsScore.cc [code]
file	AtomPairConstraintsScore.fwd.hh [code]
file	AtomPairConstraintsScore.hh [code]
file	BFactor.cc [code]
	a base class for fragment scoring
file	BFactor.hh [code]
	a base class for fragment scoring
file	CachingScoringMethod.hh [code]
	adds cashing functionality to a FragmentScoringMethod object
file	ConstScore.hh [code]
	score that adds a constant (so basically it does nothing!)
file	CSScore.cc [code]
	Object that scores a fragment by target-observed/vall-predicted chemical shift distances.
file	CSScore.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	DihedralConstraintsScore.cc [code]
	Calculates a score based on how close are dihdral angles in a Vall chunk to their target values.
file	DihedralConstraintsScore.fwd.hh [code]
	DihedralConstraintsScore forward declaration.
file	DihedralConstraintsScore.hh [code]
file	DisulfideDistance.cc [code]
file	DisulfideDistance.hh [code]
file	DisulfideIdentity.cc [code]
	a base class for fragment scoring
file	DisulfideIdentity.hh [code]
	a base class for fragment scoring
file	FourAtomsConstraintData.cc [code]
file	FourAtomsConstraintData.fwd.hh [code]
file	FourAtomsConstraintData.hh [code]
	provides a holder for data necessary to create a single constraint based on four atoms
file	fragment_scoring_utilities.cc [code]
file	fragment_scoring_utilities.hh [code]
	functions and data types common for fragment scoring
file	FragmentAllAtomCrmsd.cc [code]
	Object that scores a fragment by its crmsd to the native.
file	FragmentAllAtomCrmsd.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	FragmentChunkCrms.cc [code]
file	FragmentChunkCrms.hh [code]
	Object that scores a fragment by its tmscore to the native.
file	FragmentCrmsd.cc [code]
	Scores fragments by disulfide-linke Calpha distances.
file	FragmentCrmsd.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	FragmentCrmsdResDepth.cc [code]
	Object that scores a fragment by its crmsd to the native.
file	FragmentCrmsdResDepth.hh [code]
	Object that scores a fragment by its crmsd and residue depth to the native.
file	FragmentDME.cc [code]
	Object that scores a fragment by its Distance Matrix Error (DME) to the native.
file	FragmentDME.hh [code]
	Object that scores a fragment by its Distance Matrix Error (DME) to the native.
file	FragmentScoreManager.cc [code]
file	FragmentScoreManager.fwd.hh [code]
	FragmentScoreManager forward declaration.
file	FragmentScoreManager.hh [code]
	FragmentScoreManager forward declaration.
file	FragmentScoreMap.fwd.hh [code]
	FragmentScoreMap forward declaration.
file	FragmentScoreMap.hh [code]
file	FragmentScoringMethod.fwd.hh [code]
file	FragmentScoringMethod.hh [code]
	FragmentScoringMethod forward declaration.
file	GunnCost.cc [code]
file	GunnCost.hh [code]
file	GunnCostScore.cc [code]
	Object that scores a fragment by its crmsd to the native.
file	GunnCostScore.hh [code]
	Object that scores a fragment by Gunn cost function (how it fits to the local structure)
file	HydrophobicityProfileSimilarity.cc [code]
	a base class for fragment scoring
file	HydrophobicityProfileSimilarity.hh [code]
	Object that scores a fragment by hydrophobicity.
file	HydrophobicitySimilarity.cc [code]
	a base class for fragment scoring
file	HydrophobicitySimilarity.hh [code]
	Object that scores a fragment by hydrophobicity.
file	InterbondAngleScore.cc [code]
file	InterbondAngleScore.fwd.hh [code]
file	InterbondAngleScore.hh [code]
file	JCoupling.cc [code]
file	JCoupling.hh [code]
file	LAMBEGO_Similarity.cc [code]
file	LAMBEGO_Similarity.hh [code]
file	MidPhiOut.cc [code]
file	MidPhiOut.hh [code]
	Scores fragments by disulfide-linke Calpha distances.
file	MidPsiOut.cc [code]
file	MidPsiOut.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	PartialSecondarySimilarity.cc [code]
	scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches
file	PartialSecondarySimilarity.hh [code]
file	PCS_FragDistance.cc [code]
file	PCS_FragDistance.hh [code]
file	Phi.cc [code]
	a base class for fragment scoring
file	Phi.hh [code]
	Object that scores a fragment by predicted Phi torsions.
file	PhiPsiRmsd.cc [code]
file	PhiPsiRmsd.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	PhiPsiSquareWell.cc [code]
file	PhiPsiSquareWell.hh [code]
file	ProfileScore.cc [code]
	scores a fragment by an amino acid sequence identity
file	ProfileScore.fwd.hh [code]
file	ProfileScore.hh [code]
	FragmentScoringMethod forward declaration.
file	ProfileScoreBlosum62.cc [code]
file	ProfileScoreBlosum62.hh [code]
file	ProfileScoreDistWeight.cc [code]
file	ProfileScoreDistWeight.hh [code]
file	ProfileScoreL1.cc [code]
file	ProfileScoreL1.hh [code]
file	ProfileScoreStructL1.cc [code]
	scores a fragment using structure based profiles
file	ProfileScoreStructL1.hh [code]
	scores a fragment by L1 structure based profile score
file	ProfileScoreSubMatrix.cc [code]
	scores a fragment by substitution matrix (e.g. Blosum62) profile score
file	ProfileScoreSubMatrix.hh [code]
	scores a fragment by substitution matrix (e.g. Blosum62) profile score
file	ProlinePhiScore.cc [code]
file	ProlinePhiScore.hh [code]
	a base class for fragment scoring
file	Psi.cc [code]
	a base class for fragment scoring
file	Psi.hh [code]
	Object that scores a fragment by predicted Psi torsions.
file	PValuedFragmentScoreManager.cc [code]
file	PValuedFragmentScoreManager.hh [code]
	Score manager that stores statistics of all scores. This allows estimate p-value for a score.
file	RamaScore.cc [code]
file	RamaScore.hh [code]
	a base class for fragment scoring
file	RDCScore.cc [code]
	Object that scores a fragment by its RDC.
file	RDCScore.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	ScoreEValuator.cc [code]
	scores a fragment by an amino acid sequence identity
file	ScoreEValuator.hh [code]
	Object that scores a fragment by its crmsd to the native.
file	SecondaryIdentity.cc [code]
	scores a fragment by an amino acid sequence identity
file	SecondaryIdentity.hh [code]
	scores a fragment by an amino acid sequence identity
file	SecondarySimilarity.cc [code]
	scores a fragment by secondary structure similarity
file	SecondarySimilarity.hh [code]
	scores a fragment by secondary structure similarity
file	SequenceIdentity.cc [code]
	a base class for fragment scoring
file	SequenceIdentity.hh [code]
	a base class for fragment scoring
file	SolventAccessibility.cc [code]
	a base class for fragment scoring
file	SolventAccessibility.hh [code]
	Object that scores a fragment by predicted solvent accessibility.
file	TalosSSSimilarity.cc [code]
	scores a fragment by secondary structure similarity
file	TalosSSSimilarity.hh [code]
	scores a fragment by secondary structure similarity
file	TorsionBinSimilarity.cc [code]
file	TorsionBinSimilarity.hh [code]