frag_picker Directory Reference

Directory dependency graph for frag_picker:

Directories
directory	frag_movers
directory	nonlocal
directory	quota
directory	scores

Files
file	BestTotalScoreSelector.cc [code]
file	BestTotalScoreSelector.fwd.hh [code]
file	BestTotalScoreSelector.hh [code]
	provides a selector that picks best fragments based on their total score
file	BoundedCollector.fwd.hh [code]
file	BoundedCollector.hh [code]
file	CandidatesCollector.fwd.hh [code]
	Forward declaration for CandidatesCollector.
file	CandidatesCollector.hh [code]
	Pure virtual base class for a container holding fragment candidates.
file	CommonFragmentComparators.fwd.hh [code]
	provides a few ways to compare fragment candidates (forward definitions)
file	CommonFragmentComparators.hh [code]
	provides a few ways to compare fragment candidates
file	CompositeFragmentSelector.cc [code]
	provides a selector that picks best fragments based on their total score
file	CompositeFragmentSelector.hh [code]
	provides a selector that picks best fragments based on their total score
file	Contact.fwd.hh [code]
file	Contact.hh [code]
	A contact.
file	ContactCounts.fwd.hh [code]
file	ContactCounts.hh [code]
	Contact counts.
file	ContactTypes.cc [code]
	fragment picker contact types
file	ContactTypes.hh [code]
	fragment picker type declarations
file	CS2ndShift.cc [code]
file	CS2ndShift.hh [code]
file	CSTalosIO.cc [code]
file	CSTalosIO.hh [code]
	Class that converts Talos object into secondary shifts list.
file	CustomScoreSelector.cc [code]
file	CustomScoreSelector.fwd.hh [code]
file	CustomScoreSelector.hh [code]
	provides a selector that picks best fragments based on their total score
file	DiversifyCrmsdByClustering.cc [code]
file	DiversifyCrmsdByClustering.hh [code]
	provides a selector that picks fragments diversified by crmsd (by means of hierarchical clustering)
file	DiversifyCrmsdSelector.cc [code]
file	DiversifyCrmsdSelector.hh [code]
	provides a selector that picks best fragments based on their total score
file	DiversifyDihedralsSelector.cc [code]
file	DiversifyDihedralsSelector.hh [code]
	provides a selector that picks best fragments based on their total score
file	Faraggi_SA.cc [code]
	Faraggi maximum SA values from Faraggi et al. Proteins 2008.
file	Faraggi_SA.hh [code]
	Faraggi maximum SA values from Faraggi et al. Proteins 2008.
file	FragmentCandidate.cc [code]
file	FragmentCandidate.fwd.hh [code]
file	FragmentCandidate.hh [code]
	Something that might become a fragment if its scores will be good enough.
file	FragmentComparatorBase.fwd.hh [code]
file	FragmentComparatorBase.hh [code]
	defines a base class for all fragment comparators
file	FragmentPicker.cc [code]
	Fragment picker - the core part of picking machinery.
file	FragmentPicker.fwd.hh [code]
	Fragment picker - forward declaration.
file	FragmentPicker.hh [code]
	Fragment picker - the core part of picking machinery.
file	FragmentSelectingRule.fwd.hh [code]
file	FragmentSelectingRule.hh [code]
	provides a selector that picks best fragments based on their total score
file	GrabAllCollector.hh [code]
file	JCouplingIO.cc [code]
file	JCouplingIO.hh [code]
file	LAMBEGO_IO.cc [code]
file	LAMBEGO_IO.hh [code]
	reader for a probability distribution over A,B,E,G,O torsion bins.
file	LazySortedVector1.hh [code]
file	PdbIdChunkFilter.cc [code]
file	PdbIdChunkFilter.fwd.hh [code]
file	PdbIdChunkFilter.hh [code]
file	PhiPsiTalosIO.cc [code]
file	PhiPsiTalosIO.hh [code]
	Class that reads and writes Phi-Psi in TALOS format.
file	SidechainContactDistCutoff.cc [code]
	Defines sidechain contact distance cutoffs.
file	SidechainContactDistCutoff.fwd.hh [code]
file	SidechainContactDistCutoff.hh [code]
	Defines sidechain contact distance cutoffs.
file	TorsionBinIO.cc [code]
file	TorsionBinIO.hh [code]
	reader for a probability distribution over A,B,E,G,O torsion bins.
file	VallChunk.cc [code]
	a contiguous chunk of residues taken from a vall.
file	VallChunk.fwd.hh [code]
	forward declaration for VallChunk
file	VallChunk.hh [code]
	a contiguous chunk of residues taken from a vall.
file	VallChunkFilter.fwd.hh [code]
	forward declaration for VallChunkFilter
file	VallChunkFilter.hh [code]
	defines two basic chunk filters based on pdb id
file	VallProvider.cc [code]
	reads a vall library and serves the data in chunks
file	VallProvider.fwd.hh [code]
	forward declaration for VallProvider
file	VallProvider.hh [code]
	reads a vall library and serves the data in chunks
file	VallResidue.cc [code]
	class for managing a line of the Vall fragment library
file	VallResidue.fwd.hh [code]
	forward declaration for core::fragment::picking::vall:VallResidue
file	VallResidue.hh [code]
	class for managing a line of the Vall fragment library