protocols Directory Reference

Directory dependency graph for protocols:

Directories
directory	aa_composition
directory	abinitio
directory	analysis
directory	anchored_design
directory	antibody
directory	antibody_legacy
directory	backrub
directory	boinc
directory	branch_angle
directory	canonical_sampling
directory	carbohydrates
directory	cartesian
directory	checkpoint
directory	cluster
directory	coarse_rna
directory	comparative_modeling
directory	constraint_generator
directory	constraints_additional
directory	contact_map
directory	coupled_moves
directory	cryst
directory	cyclic_peptide
directory	cyclic_peptide_predict
directory	ddg
directory	denovo_design
directory	design_opt
directory	dna
directory	docking
directory	domain_assembly
directory	electron_density
directory	environment
directory	enzdes
directory	enzymatic_movers
directory	evaluation
directory	farna
directory	features
directory	fibril
directory	filters
directory	fldsgn
directory	flexpack
directory	flexpep_docking
directory	floppy_tail
directory	flxbb
directory	forge
directory	frag_picker
directory	frags
directory	generalized_kinematic_closure
directory	genetic_algorithm
directory	grafting
directory	hbnet
directory	helical_bundle
directory	helix_capper
directory	hotspot_hashing
directory	hybridization
directory	idealize
directory	indel
directory	indexed_structure_store
directory	init
directory	interface
directory	jd2
directory	jd3
directory	jobdist
directory	jumping
directory	kinematic_closure
directory	kinmatch
directory	ligand_docking
directory	loop_build
directory	loop_modeling
directory	loophash
directory	loops
directory	magnesium
directory	make_rot_lib
directory	match
directory	matdes
directory	md
directory	medal
directory	membrane
directory	metal_interface
directory	motif_grafting
directory	motifs
directory	moves
directory	mpi_refinement
directory	multistate_design
directory	ncbb
directory	neighbor
directory	noesy_assign
directory	nonlocal
directory	normalmode
directory	optimize_weights
directory	pack_daemon
directory	pb_potential
directory	pmut_scan
directory	pockets
directory	pose_length_moves
directory	pose_reporters
directory	pose_selectors
directory	protein_interface_design
directory	qsar
directory	rbsegment_relax
directory	relax
directory	residue_optimization
directory	residue_selectors
directory	rigid
directory	rosetta_scripts
directory	rotamer_recovery
directory	RotamerDump
directory	rpc
directory	sasa_scores
directory	scoring
directory	seeded_abinitio
directory	sewing
directory	sic_dock
directory	simple_filters
directory	simple_moves
directory	sparta
directory	ss_prediction
directory	star
directory	stepwise
directory	surface_docking
directory	symmetric_docking
directory	toolbox
directory	topology_broker
directory	trajectory
directory	unfolded_state_energy_calculator
directory	viewer
directory	vip
directory	wum