simple_filters Directory Reference

Directory dependency graph for simple_filters:

Files
file	AbinitioBaseFilter.cc
file	AbinitioBaseFilter.hh
	header file for AbinitioBaseFilter.cc
file	AlaScan.cc
file	AlaScan.fwd.hh
file	AlaScan.hh
	definition of filter class AlsScan.
file	AlaScanCreator.hh
	FilterCreators for the AlaScanCreator.
file	AngleToVectorFilter.cc
file	AngleToVectorFilter.fwd.hh
file	AngleToVectorFilter.hh
file	AngleToVectorFilterCreator.hh
	FilterCreators for the AngleToVectorFilter.
file	AtomicContactFilter.cc
file	AtomicContactFilter.hh
file	AtomicContactFilterCreator.hh
	FilterCreator for the AtomicContactFilter.
file	AtomicDistanceFilter.cc
file	AtomicDistanceFilter.hh
	Filter for looking at specific atom distances.
file	AtomicDistanceFilterCreator.hh
	FilterCreator for the AtomicDistanceFilter.
file	AveragePathLengthFilter.cc
	Filter on the average covalent path length between residues, including disulfides.
file	AveragePathLengthFilter.fwd.hh
	Filter on the average covalent path length between residues, including disulfides.
file	AveragePathLengthFilter.hh
	Filter on the average covalent path length between residues, including disulfides.
file	AveragePathLengthFilterCreator.hh
	FilterCreators for the AveragePathLengthFilter.
file	BatchNrEvaluator.cc
file	BatchNrEvaluator.hh
file	BuriedUnsatHbondFilter.cc
file	BuriedUnsatHbondFilter.fwd.hh
file	BuriedUnsatHbondFilter.hh
	definition of filter class BuriedUnsatHbondFilter.
file	BuriedUnsatHbondFilterCreator.hh
	FilterCreators for the BuriedUnsatHbondFilterCreator.
file	CamShiftEvaluator.cc
file	CamShiftEvaluator.hh
file	CamShiftEvaluatorCreator.cc
file	CamShiftEvaluatorCreator.hh
	Header for CamShiftEvaluatorCreator.
file	ChiWellRmsdEvaluator.cc
file	ChiWellRmsdEvaluator.hh
file	ChiWellRmsdEvaluatorCreator.cc
file	ChiWellRmsdEvaluatorCreator.hh
	Header for ChiWellRmsdEvaluatorCreator.
file	COFilter.cc
	runs reject or accept filters on pose
file	COFilter.hh
file	ConservedPosMutationFilter.cc
file	ConservedPosMutationFilter.fwd.hh
file	ConservedPosMutationFilter.hh
	header file for ConservedPosMutationFitler class.
file	ConservedPosMutationFilterCreator.hh
	FilterCreator for the ConservedPosMutationFilter.
file	ConstraintScoreCutoffFilter.cc
file	ConstraintScoreCutoffFilter.fwd.hh
file	ConstraintScoreCutoffFilter.hh
	header file for ConstraintScoreCutoffFitler class.
file	ConstraintScoreCutoffFilterCreator.hh
	FilterCreator for the ConstraintScoreCutoffFilter.
file	ConstraintScoreFilter.cc
	Filter that computes scores of constraints generated by ConstraintGenerators.
file	ConstraintScoreFilter.fwd.hh
	Filter that computes scores of constraints generated by ConstraintGenerators.
file	ConstraintScoreFilter.hh
	Filter that computes scores of constraints generated by ConstraintGenerators.
file	ConstraintScoreFilterCreator.hh
	Filter that computes scores of constraints generated by ConstraintGenerators.
file	ContactMapEvaluator.cc
file	ContactMapEvaluator.hh
file	ContactMapEvaluatorCreator.cc
file	ContactMapEvaluatorCreator.hh
	Header for ContactMapEvaluatorCreator.
file	DdgFilter.cc
file	DdgFilter.fwd.hh
file	DdgFilter.hh
	definition of filter class DdgFilter.
file	DdgFilterCreator.hh
	FilterCreators for the DdgFilterCreator.
file	DdGScan.cc
file	DdGScan.fwd.hh
file	DdGScan.hh
	definition of filter class DdGScan.
file	DdGScanCreator.hh
	FilterCreators for the DdGScanCreator.
file	DeltaFilter.cc
file	DeltaFilter.fwd.hh
	forward declaration for DeltaFilter
file	DeltaFilter.hh
	Reports the average degree of connectivity of interface residues.
file	DeltaFilterCreator.hh
	FilterCreators for the DeltaFilter.
file	DisulfideEntropyFilter.cc
	Filter on the entropic effect of disulfide linkage.
file	DisulfideEntropyFilter.fwd.hh
	Filter on the entropic effect of disulfide linkage.
file	DisulfideEntropyFilter.hh
	Filter on the entropic effect of disulfide linkage.
file	DisulfideEntropyFilterCreator.hh
	FilterCreators for the DisulfideEntropyFilter.
file	DomainInterfaceFilter.cc
	Implementation of DomainInterfaceFilter which checks whether a defined region of a protein is part of an interface with a pre-defined other domain of the protein.
file	DomainInterfaceFilter.fwd.hh
	forward declaration for DomainInterfaceFilter which checks if a query region is part of an an interface with a pre-defined other domain of a protein.
file	DomainInterfaceFilter.hh
	header file for DomainInterfaceFilter which checks whether a defined region of a protein is buried in an interface by evaluating the number of non-water neighbors of all residues
file	EnergyPerResidueFilter.cc
file	EnergyPerResidueFilter.fwd.hh
file	EnergyPerResidueFilter.hh
	definition of filter class EnergyPerResidueFilter.
file	EnergyPerResidueFilterCreator.hh
	FilterCreators for the EnergyPerResidueFilterCreator.
file	EvaluatedTrialMover.cc
file	EvaluatedTrialMover.hh
file	ExpiryFilter.cc
file	ExpiryFilter.fwd.hh
file	ExpiryFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	ExpiryFilterCreator.hh
	FilterCreators for the ExpiryFilter.
file	ExternalEvaluator.cc
file	ExternalEvaluator.hh
file	ExtraScoreEvaluatorCreator.cc
file	ExtraScoreEvaluatorCreator.hh
	Header for ExtraScoreEvaluatorCreator.
file	FileExistFilter.cc
file	FileExistFilter.fwd.hh
file	FileExistFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	FileExistFilterCreator.hh
	FilterCreators for the FileExistFilter.
file	FileRemoveFilter.cc
file	FileRemoveFilter.fwd.hh
file	FileRemoveFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	FileRemoveFilterCreator.hh
	FilterCreators for the FileRemoveFilter.
file	GeometryFilter.cc
file	GeometryFilter.fwd.hh
file	GeometryFilter.hh
	definition of filter class GeometryFilter.
file	GeometryFilterCreator.hh
	FilterCreators for the GeometryFilterCreator.
file	HolesFilter.cc
file	HolesFilter.fwd.hh
	filter structures by will's hole score
file	HolesFilter.hh
	header file for HolesFilter class.
file	HolesFilterCreator.hh
	FilterCreator for the HolesFilter.
file	InterfaceBindingEnergyDensityFilter.cc
	Implementation of the binding-energy-density filter.
file	InterfaceBindingEnergyDensityFilter.fwd.hh
	Forward declaration and typedefs for InterfaceBindingEnergyDensityFilter.
file	InterfaceBindingEnergyDensityFilter.hh
	Filter class for looking at the dGbind/dSASA ratio.
file	InterfaceBindingEnergyDensityFilterCreator.hh
	FilterCreators for the InterfaceBindingEnergyDensityFilterCreator.
file	InterfaceSasaFilter.cc
file	InterfaceSasaFilter.fwd.hh
file	InterfaceSasaFilter.hh
	definition of filter class InterfaceSasaFilter.
file	InterfaceSasaFilterCreator.hh
	FilterCreators for the InterfaceSasaFilterCreator.
file	InterRepeatContactFilter.cc
file	InterRepeatContactFilter.fwd.hh
file	InterRepeatContactFilter.hh
file	InterRepeatContactFilterCreator.hh
file	IntraRepeatContactFilter.cc
file	IntraRepeatContactFilter.fwd.hh
file	IntraRepeatContactFilter.hh
file	IntraRepeatContactFilterCreator.hh
file	JScoreEvaluator.cc
file	JScoreEvaluator.hh
file	JScoreEvaluatorCreator.cc
file	JScoreEvaluatorCreator.hh
	Header for JScoreEvaluatorCreator.
file	JumpEvaluator.cc
file	JumpEvaluator.hh
file	JumpNrEvaluatorCreator.cc
file	JumpNrEvaluatorCreator.hh
	Header for JumpNrEvaluatorCreator.
file	LeastNativeLike9merFilter.cc
file	LeastNativeLike9merFilter.fwd.hh
file	LeastNativeLike9merFilter.hh
	Find the rmsd to the worst 9mer in the chain.
file	LeastNativeLike9merFilterCreator.hh
file	MotifScoreFilter.cc
	Scores poses using will's motifScore.
file	MotifScoreFilter.fwd.hh
file	MotifScoreFilter.hh
file	MotifScoreFilterCreator.hh
file	MultipleSigmoidsFilter.cc
file	MultipleSigmoidsFilter.fwd.hh
file	MultipleSigmoidsFilter.hh
file	MultipleSigmoidsFilterCreator.hh
	FilterCreators for the MultipleSigmoidsFilter.
file	MutationsFilter.cc
file	MutationsFilter.fwd.hh
	forward declaration for MutationsFilter
file	MutationsFilter.hh
	A filter to return the number of mutated positions within a given set of designable resdues.
file	MutationsFilterCreator.hh
	FilterCreators for the MutationsFilter.
file	NativeEvaluatorCreator.cc
file	NativeEvaluatorCreator.hh
	Header for NativeEvaluatorCreator.
file	NeighborTypeFilter.cc
file	NeighborTypeFilter.fwd.hh
file	NeighborTypeFilter.hh
	definition of filter class InterfaceSasaFilter.
file	NeighborTypeFilterCreator.hh
	FilterCreators for the NeighborTypeFilterCreator.
file	NetChargeFilter.cc
file	NetChargeFilter.fwd.hh
file	NetChargeFilter.hh
	definition of filter class NetChargeFilter.
file	NetChargeFilterCreator.hh
	FilterCreators for the NetChargeFilterCreator.
file	NMerPSSMEnergyFilter.cc
file	NMerPSSMEnergyFilter.fwd.hh
file	NMerPSSMEnergyFilter.hh
	definition of filter class NMerPSSMEnergyFilter.
file	NMerPSSMEnergyFilterCreator.hh
	FilterCreators for the NMerPSSMEnergyFilter.
file	NMerSVMEnergyFilter.cc
file	NMerSVMEnergyFilter.fwd.hh
file	NMerSVMEnergyFilter.hh
	definition of filter class NMerSVMEnergyFilter.
file	NMerSVMEnergyFilterCreator.hh
	FilterCreators for the NMerSVMEnergyFilter.
file	NonSequentialNeighborsFilter.cc
file	NonSequentialNeighborsFilter.fwd.hh
file	NonSequentialNeighborsFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	NonSequentialNeighborsFilterCreator.hh
	FilterCreators for the NonSequentialNeighborsFilter.
file	OperatorFilter.cc
file	OperatorFilter.fwd.hh
file	OperatorFilter.hh
file	OperatorFilterCreator.hh
	FilterCreators for the OperatorFilter.
file	PackerNeighborGraphFilter.cc
file	PackerNeighborGraphFilter.hh
	header file for packer neighbor graph based filter
file	PackStatFilter.cc
file	PackStatFilter.fwd.hh
file	PackStatFilter.hh
	header file for PackStatFilter class.
file	PackStatFilterCreator.hh
	FilterCreator for the PackStatFilter.
file	PalesEvaluator.cc
file	PalesEvaluator.hh
file	PalesEvaluatorCreator.cc
file	PalesEvaluatorCreator.hh
	Header for PalesEvaluatorCreator.
file	PDDFScoreFilter.cc
	runs reject or accept filters on pose
file	PDDFScoreFilter.fwd.hh
file	PDDFScoreFilter.hh
file	PoolEvaluatorCreator.cc
file	PoolEvaluatorCreator.hh
	Header for PoolEvaluatorCreator.
file	PoseCommentFilter.cc
file	PoseCommentFilter.fwd.hh
file	PoseCommentFilter.hh
file	PoseCommentFilterCreator.hh
	FilterCreators for the PoseCommentFilter.
file	PoseInfoFilter.cc
file	PoseInfoFilter.hh
	Filter for outputing information about the pose.
file	PoseInfoFilterCreator.hh
	FilterCreator for the PoseInfoFilter.
file	PoseMetricEvaluator.hh
file	PredictedBurialEvaluator.cc
file	PredictedBurialEvaluator.hh
file	PredictedBurialFnEvaluatorCreator.cc
file	PredictedBurialFnEvaluatorCreator.hh
	Header for PredictedBurialFnEvaluatorCreator.
file	RangeFilter.cc
file	RangeFilter.fwd.hh
file	RangeFilter.hh
	Range filter evaluates if the return value of a particular filter is between a specific range.
file	RangeFilterCreator.hh
	FilterCreator for the RangeFilter.
file	RDC_Evaluator.cc
file	RDC_Evaluator.fwd.hh
file	RDC_Evaluator.hh
file	RdcEvaluatorCreator.cc
file	RdcEvaluatorCreator.hh
	Header for RdcEvaluatorCreator.
file	RdcSelectEvaluatorCreator.cc
file	RdcSelectEvaluatorCreator.hh
	Header for RdcSelectEvaluatorCreator.
file	RdcTargetEvaluatorCreator.cc
file	RdcTargetEvaluatorCreator.hh
	Header for RdcTargetEvaluatorCreator.
file	RelativePoseFilter.cc
file	RelativePoseFilter.fwd.hh
file	RelativePoseFilter.hh
	Computes a filter's value on a pose that is modified from one that is read from disk. Useful for computing values for the same sequence across many structures.
file	RelativePoseFilterCreator.hh
file	RepeatParameterFilter.cc
	can filter a pose for the rise, run and omega. Many of the functions have been stolen from RepeatGlobalFrame but made const to work with filter obejcts.
file	RepeatParameterFilter.fwd.hh
	forward declaration for RepeatParameterFilter
file	RepeatParameterFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	RepeatParameterFilterCreator.hh
file	ReportFilter.cc
file	ReportFilter.fwd.hh
file	ReportFilter.hh
	Simple filter that tests whether a file exists. Useful to test whether we're recovering from a checkpoint.
file	ReportFilterCreator.hh
	FilterCreators for the ReportFilter.
file	ResidueBurialFilter.cc
file	ResidueBurialFilter.fwd.hh
file	ResidueBurialFilter.hh
	definition of filter class ResidueBurialFilter.
file	ResidueBurialFilterCreator.hh
	FilterCreator for the ResidueBurialFilter.
file	ResidueCountFilter.cc
	Filter on the total number of residues in the structure.
file	ResidueCountFilter.fwd.hh
	Filter on the total number of residues in the structure.
file	ResidueCountFilter.hh
	Filter on the total number of residues in the structure.
file	ResidueCountFilterCreator.hh
	FilterCreators for the ResidueCountFilter.
file	ResidueDepthFilter.cc
file	ResidueDepthFilter.fwd.hh
file	ResidueDepthFilter.hh
file	ResidueDepthFilterCreator.hh
	FilterCreator for the ResidueDepthFilter.
file	ResidueDistanceFilter.cc
file	ResidueDistanceFilter.fwd.hh
file	ResidueDistanceFilter.hh
	definition of filter class ResidueDistanceFilter.
file	ResidueDistanceFilterCreator.hh
	FilterCreator for the ResidueDistanceFilter.
file	ResidueIEFilter.cc
file	ResidueIEFilter.fwd.hh
file	ResidueIEFilter.hh
	definition of filter class ResidueIEFilter.
file	ResidueIEFilterCreator.hh
	FilterCreators for the ResidueIEFilterCreator.
file	ResidueSelectionDistanceFilter.cc
file	ResidueSelectionDistanceFilter.fwd.hh
file	ResidueSelectionDistanceFilter.hh
	loops over the residues in a residue selector and reports the average distance
file	ResidueSelectionDistanceFilterCreator.hh
	FilterCreator for the ResidueSelectionDistanceFilter.
file	ResidueSetChainEnergyFilter.cc
file	ResidueSetChainEnergyFilter.fwd.hh
file	ResidueSetChainEnergyFilter.hh
	definition of filter class ResidueSetChainEnergyFilter.
file	ResidueSetChainEnergyFilterCreator.hh
	FilterCreators for the ResidueSetChainEnergyFilter.
file	ResiduesInInterfaceFilter.cc
file	ResiduesInInterfaceFilter.fwd.hh
file	ResiduesInInterfaceFilter.hh
	Reports to Tracer which residues are designable in a taskfactory.
file	ResiduesInInterfaceFilterCreator.hh
	FilterCreators for the ResiduesInInterfaceFilter.
file	RGFilter.cc
	runs reject or accept filters on pose
file	RGFilter.hh
file	RmsdEvaluator.cc
file	RmsdEvaluator.hh
file	RmsdEvaluatorCreator.cc
file	RmsdEvaluatorCreator.hh
	Header for RmsdEvaluatorCreator.
file	RmsdTargetEvaluatorCreator.cc
file	RmsdTargetEvaluatorCreator.hh
	Header for RmsdTargetEvaluatorCreator.
file	RotamerBoltzmannWeight.cc
file	RotamerBoltzmannWeight.fwd.hh
file	RotamerBoltzmannWeight.hh
	Reports to Tracer which residues are designable in a taskfactory.
file	RotamerBoltzmannWeight2.cc
	Next-generation RotamerBoltzmannWeight filter.
file	RotamerBoltzmannWeight2.fwd.hh
	Next-generation RotamerBoltzmannWeight filter.
file	RotamerBoltzmannWeight2.hh
	Next-generation RotamerBoltzmannWeight filter.
file	RotamerBoltzmannWeight2Creator.hh
	Next-generation RotamerBoltzmannWeight filter.
file	RotamerBoltzmannWeightFilterCreator.hh
	FilterCreators for the RotamerBoltzmannWeightFilter.
file	SavePoseConstraintToFileFilter.cc
file	SavePoseConstraintToFileFilter.hh
	Filter for outputing information about the pose.
file	SavePoseConstraintToFileFilterCreator.hh
	FilterCreator for the SavePoseConstraintToFileFilter.
file	SaveResfileToDiskFilter.cc
	Outputs a resfile based on a given set of taskoperations.
file	SaveResfileToDiskFilter.fwd.hh
file	SaveResfileToDiskFilter.hh
	header file for SaveResfileToDiskFilter class
file	SaveResfileToDiskFilterCreator.hh
	FilterCreator for the SaveResfileToDiskFilter.
file	SAXSScoreFilter.cc
	runs reject or accept filters on pose
file	SAXSScoreFilter.fwd.hh
file	SAXSScoreFilter.hh
file	ScoreCutoffFilter.cc
file	ScoreCutoffFilter.fwd.hh
file	ScoreCutoffFilter.hh
	header file for ScoreCutoffFitler class.
file	ScoreCutoffFilterCreator.hh
	FilterCreator for the ScoreCutoffFilter.
file	ScoreEvaluator.cc
file	ScoreEvaluator.hh
file	ScoreTypeFilter.cc
file	ScoreTypeFilter.fwd.hh
file	ScoreTypeFilter.hh
	definition of filter class ScoreTypeFilter.
file	ScoreTypeFilterCreator.hh
	FilterCreators for the ScoreTypeFilter.
file	ShapeComplementarityFilter.cc
file	ShapeComplementarityFilter.fwd.hh
file	ShapeComplementarityFilter.hh
	header file for ShapeComplementarityFilter class
file	ShapeComplementarityFilterCreator.hh
	FilterCreator for the ShapeComplementarityFilter.
file	SheetFilter.cc
	runs reject or accept filters on pose
file	SheetFilter.hh
file	SidechainRmsdFilter.cc
	A filter based on automorphic sidechain RMSD.
file	SidechainRmsdFilter.fwd.hh
	A filter based on automorphic sidechain RMSD.
file	SidechainRmsdFilter.hh
	A filter based on automorphic sidechain RMSD.
file	SidechainRmsdFilterCreator.hh
file	SigmoidFilter.cc
file	SigmoidFilter.fwd.hh
file	SigmoidFilter.hh
file	SigmoidFilterCreator.hh
	FilterCreators for the SigmoidFilter.
file	SSElementBisectddGFilter.cc
file	SSElementBisectddGFilter.fwd.hh
	Filter for the interconnection between secondary elements.
file	SSElementBisectddGFilter.hh
	Disconnects a protein by secondary structure elements and calculates the DDG between the elements.
file	SSElementBisectddGFilterCreator.hh
file	SSElementMotifContactFilter.cc
file	SSElementMotifContactFilter.fwd.hh
	Filter for the interconnection between secondary elements.
file	SSElementMotifContactFilter.hh
	Reports either the average ss-contact or the worst ss-contacting element.
file	SSElementMotifContactFilterCreator.hh
file	SSMotifFinderFilter.cc
file	SSMotifFinderFilter.fwd.hh
file	SSMotifFinderFilter.hh
file	SSMotifFinderFilterCreator.hh
	FilterCreators for the SSMotifFinderFilter.
file	StemFinderFilter.cc
file	StemFinderFilter.fwd.hh
file	StemFinderFilter.hh
file	StemFinderFilterCreator.hh
	FilterCreators for the StemFinderFilter.
file	StructuralSimilarityEvaluator.cc
file	StructuralSimilarityEvaluator.fwd.hh
	forward declaration for StructuralSimilarityEvaluator class.
file	StructuralSimilarityEvaluator.hh
file	StructureSimilarityEvaluatorCreator.cc
file	StructureSimilarityEvaluatorCreator.hh
	Header for StructureSimilarityEvaluatorCreator.
file	SymmetricMotifFilter.cc
file	SymmetricMotifFilter.hh
file	SymmetricMotifFilterCreator.hh
file	TaskAwareSASAFilter.cc
	Calculates SASA for a set of residues defined by TaskOperations.
file	TaskAwareSASAFilter.fwd.hh
file	TaskAwareSASAFilter.hh
	header file for TaskAwareSASAFilter class
file	TaskAwareSASAFilterCreator.hh
	FilterCreator for the TaskAwareSASAFilter.
file	TaskAwareScoreTypeFilter.cc
file	TaskAwareScoreTypeFilter.fwd.hh
	forward declaration for TaskAwareScoreTypeFilter
file	TaskAwareScoreTypeFilter.hh
file	TaskAwareScoreTypeFilterCreator.hh
	FilterCreators for the TaskAwareScoreTypeFilter.
file	TerminusDistanceFilter.cc
file	TerminusDistanceFilter.fwd.hh
file	TerminusDistanceFilter.hh
	definition of filter class TerminusDistanceFilter.
file	TerminusDistanceFilterCreator.hh
	FilterCreators for the TerminusDistanceFilterCreator.
file	TotalSasaFilter.cc
file	TotalSasaFilter.fwd.hh
file	TotalSasaFilter.hh
	definition of filter class TotalSasaFilter.
file	TotalSasaFilterCreator.hh
	FilterCreators for the TotalSasaFilterCreator.