sampling Directory Reference

Directory dependency graph for sampling:

Directories
directory	requirements

Files
file	AddStartnodeFragments.cc
file	AddStartnodeFragments.fwd.hh
file	AddStartnodeFragments.hh
	A Mover that uses loophash to find fragments that can bridge a gap with minimal modifications to the original pose.
file	AddStartnodeFragmentsCreator.hh
file	AppendAssemblyMover.cc
file	AppendAssemblyMover.fwd.hh
file	AppendAssemblyMover.hh
	A Mover that uses loophash to find fragments that can bridge a gap with minimal modifications to the original pose.
file	AppendAssemblyMoverCreator.hh
file	AssemblyConstraintsMover.cc
file	AssemblyConstraintsMover.fwd.hh
file	AssemblyConstraintsMover.hh
	A simple mover that reads a NativeRotamersFile generated by a an AssemblyMover run and generates the necessary ResidueType constraints to add to the pose.
file	AssemblyConstraintsMoverCreator.hh
file	AssemblyMover.cc
file	AssemblyMover.fwd.hh
file	AssemblyMover.hh
file	AssemblyMoverCreator.hh
file	EnumerateAssemblyMover.cc
	Enumerate every possible assembly exhaustively.
file	EnumerateAssemblyMover.fwd.hh
file	EnumerateAssemblyMover.hh
file	EnumerateAssemblyMoverCreator.hh
file	GivenPathAssemblyMover.cc
file	GivenPathAssemblyMover.fwd.hh
file	GivenPathAssemblyMover.hh
	This Mover generates assemblies by taking the best edge possible for each addition. This process is repeated cycles times and the best overall Assembly that was found is returned.
file	GivenPathAssemblyMoverCreator.hh
file	GreedyAssemblyMover.cc
file	GreedyAssemblyMover.fwd.hh
file	GreedyAssemblyMover.hh
	This Mover generates assemblies by taking the best edge possible for each addition. This process is repeated cycles times and the best overall Assembly that was found is returned.
file	GreedyAssemblyMoverCreator.hh
file	LoophashAssemblyMover.cc
	Derived from AssemblyMover, this mover generates an assembly and then uses Loophash segments to connect any broken segments resulting from the assembly process.
file	LoophashAssemblyMover.fwd.hh
file	LoophashAssemblyMover.hh
	A Mover that uses loophash to find fragments that can bridge a gap with minimal modifications to the original pose.
file	LoophashAssemblyMoverCreator.hh
file	MonteCarloAssemblyMover.cc
	Assembly substructures by MonteCarlo way.
file	MonteCarloAssemblyMover.fwd.hh
file	MonteCarloAssemblyMover.hh
	Assembly substructures by MonteCarlo way.
file	MonteCarloAssemblyMoverCreator.hh
file	NodeConstraintAssemblyMover.cc
file	NodeConstraintAssemblyMover.fwd.hh
file	NodeConstraintAssemblyMover.hh
	A Mover that combines Smotif models into a continuous protein design.
file	NodeConstraintAssemblyMoverCreator.hh
file	ReadNativeRotamersFileCreator.hh
file	ReadRepeatNativeRotamersFileCreator.hh
file	RehashAssemblyMover.cc
	Derived from AssemblyMover, this mover generates an assembly and then uses Loophash segments to connect any broken segments resulting from the assembly process.
file	RehashAssemblyMover.fwd.hh
file	RehashAssemblyMover.hh
	A Mover that uses more sewing to close gaps from discontinous assemblies.
file	RehashAssemblyMoverCreator.hh
file	RepeatAssemblyMover.cc
file	RepeatAssemblyMover.fwd.hh
file	RepeatAssemblyMover.hh
	An AssemblyMover specific for repeating backbones. This Mover is currently pretty hacky and makes assumes that every node is exactly 3 segments long, and that the assembly is a continuous assembly.
file	RepeatAssemblyMoverCreator.hh
file	SewGraph.cc
file	SewGraph.fwd.hh
file	SewGraph.hh
	A set of simple container classes used by the SewingProtocol. These classes are used during the Hashing of coordinates, as well as during assembly of low-resolution assemblies.