- f -

• F() : ObjexxFCL::format
• fa_closure_protocol() : loops
• fa_custom_pair_distance_file() : score
• fa_dun_canonicals_use_voronoi() : corrections::score
• fa_dun_correct_rotamer_well_order() : corrections::score
• fa_dun_noncanonicals_use_voronoi() : corrections::score
• fa_dun_thresh() : willmatch
• fa_Hatr() : score
• FA_low_res_rnp_scoring() : score::rna
• fa_max_dis() : score
• Fa_Membed_update() : membrane
• fa_mode() : remodel::staged_sampling
• fa_refine() : smhybrid
• fa_relax_moves() : remodel::staged_sampling
• fa_stack_base_base_only() : score
• fa_stack_include_rna_protein() : score
• fa_stack_lr_dist_cutoff() : score
• fa_stack_lr_prefactor() : score
• fa_stack_lr_stack_cutoff() : score
• fa_stack_sol_dist_cutoff() : score
• fa_stack_sol_prefactor() : score
• fa_stack_sol_stack_cutoff() : score
• faatr() : mh::filter
• faatr_or_hb() : mh::filter
• faatr_or_hbbb() : mh::filter
• factorA() : bbg
• factorB() : bbg
• factorial() : numeric
• facts_adjbb_elec_scale() : score
• facts_adjbb_solv_scale() : score
• facts_adjbs_elec_scale() : score
• facts_adjbs_solv_scale() : score
• facts_asp_patch() : score
• facts_binding_affinity() : score
• facts_charge_dir() : score
• facts_default() : corrections
• facts_die() : score
• facts_dshift() : score
• facts_eff_charge_dir() : score
• facts_eq_type() : score
• facts_GBpair_cut() : score
• facts_intbb_elec_scale() : score
• facts_intbb_solv_scale() : score
• facts_intbs_elec_scale() : score
• facts_intbs_solv_scale() : score
• facts_intrascale_by_level() : score
• facts_intsc_elec_scale() : score
• facts_intsc_solv_scale() : score
• facts_kappa() : score
• facts_plane_aa() : score
• facts_plane_to_self() : score
• facts_saltbridge_correction() : score
• fail_on_bad_hbond() : in::file
• fail_unclosed() : abrelax
• failed_job_exception() : jd2
• FArray_to_vector_of_xyzvectors() : numeric
• FArray_to_xyzmatrix() : numeric
• fast() : dna::specificity , loops , relax
• fast_loops() : fast_loops
• fast_relax_rounds() : cyclic_peptide
• fast_relax_sequence_file() : fast_loops
• fast_remainder() : numeric , ObjexxFCL
• fast_sc_moves() : canonical_sampling::probabilities
• fast_sc_moves_ntrials() : canonical_sampling::probabilities
• fasta() : in::file
• fastdens_params() : edensity
• fastdens_wt() : edensity
• fastrelax() : abinitio
• fav_nat_bonus() : matdes::design
• favor_native_res() : enzdes
• fconfig() : in
• fft() : numeric::fourier
• fft2() : numeric::fourier
• fft3() : numeric::fourier
• fft3_dynamic() : numeric::fourier
• fiber_diffraction() : score::fiber_diffraction
• figure_out_WT_seq() : mutant_modeler
• file() : in::file , out::file
• file_basename() : utility::file , utility
• file_contents() : utility
• file_delete() : utility::file
• file_exists() : utility::file
• file_extension() : utility::file
• file_name_prefix_for_binder() : binder
• file_prefix() : motifs
• file_size() : utility::file
• filename() : utility
• filter() : mh::filter
• filter_by_phipsi() : lh
• filter_chain_closure() : rna::denovo
• filter_chain_closure_distance() : rna::denovo
• filter_chain_closure_halfway() : rna::denovo
• filter_colliding_upstream_residues() : match
• filter_cst_file() : fast_loops
• filter_cst_weight() : fast_loops
• filter_harvest() : mh::filter
• filter_io() : mh::filter
• filter_JC() : frags
• filter_lores_base_pairs() : rna::denovo
• filter_lores_base_pairs_early() : rna::denovo
• filter_native_big_bins() : stepwise::protein
• filter_omega() : remodel
• filter_output_filename() : stepwise::rna
• filter_oversaturated_hbond_acceptors() : cyclic_peptide
• filter_radius() : remodel
• filter_rise() : remodel
• filter_stage2_beginning() : relax
• filter_stage2_end() : relax
• filter_stage2_half() : relax
• filter_stage2_quarter() : relax
• filter_templates() : jumps
• filter_trial() : flxbb
• filter_type() : flxbb
• filter_up_to_maxlib() : lh
• filter_upstream_downstream_collisions() : match
• filter_user_alignment_res() : stepwise::rna
• filters() : AnchoredDesign::filters , filters
• final_clean_fastrelax() : loops
• final_clean_relax() : abinitio
• final_min_glycans() : carbohydrates::glycan_relax
• final_repack_without_ligand() : enzdes
• final_score_filter() : loops
• find_CA() : sidechain_cst_3
• find_cache_file() : basic::database
• find_chi_angle() : erraser_util
• find_chi_angle_std_pdb() : erraser_analysis , erraser_single_res_analysis
• find_closest() : utility
• find_connected_components() : utility::graph
• find_database_path() : basic::database
• find_error_res() : erraser_util
• find_file() : arls_impl
• find_first_non_zero() : utility::json_spirit
• find_nearby_res() : erraser_util
• find_nearest_value() : numeric
• find_neighbors() : remodel::design
• find_neighbors_3dgrid() : score
• find_neighbors_stripehash() : score
• find_pairs() : DRRAFTER , mutant_modeler
• find_pairs_dict() : DRRAFTER
• find_programs() : arls_impl
• find_unmarked_node() : utility::graph
• find_value() : utility::json_spirit
• findUU() : numeric::model_quality
• finer_sampling_at_chain_closure() : stepwise::rna
• fingerprint() : fingerprint
• first_principal_component() : numeric
• fit_method() : rdc
• fit_pddf_area() : score::saxs
• fit_reference_energies_to_aa_profile_recovery() : optE
• fiveprime_cap() : full_model
• fix() : optE
• fix_aligned_residues() : templates
• fix_angles() : stepwise::polar_hydrogens
• fix_backbone() : coupled_moves
• fix_boolean_types() : binder
• fix_ca_bond_angles() : loops
• fix_catalytic_aa() : enzdes
• fix_chainbreak() : jumps
• fix_disulf() : in
• fix_frag_file() : templates
• fix_his_tautomer() : packing
• fix_jumps() : jumps
• fix_lengths() : stepwise::polar_hydrogens
• fix_margin() : templates
• fix_natsc() : loops
• fix_normAzz() : rdc
• fix_omega() : relax
• fix_residues_to_native() : abinitio
• fix_short_segment() : bbg
• fix_torsions() : stepwise::polar_hydrogens
• fixbb_substitutions_scale() : flexpack::annealer
• fixDa() : rdc
• fixed() : optE
• fixed_Fstring_of() : ObjexxFCL
• fixed_membrane() : membrane
• fixed_res() : rna::erraser , stepwise , willmatch
• fixed_res_files() : smhybrid
• fixed_stems() : rna::denovo
• fixed_string_of() : ObjexxFCL
• fixEigenvector() : numeric::model_quality
• fixR() : rdc
• fixup() : magnesium
• flank_residue_min() : antibody
• flex_sugar() : motifs
• flexbb_protocol() : enzdes
• flexible_bb() : mp::dock
• flexible_bb_docking() : docking
• flexible_bb_docking_interface_dist() : docking
• flexible_chain() : FloppyTail
• flexible_sc() : mp::dock
• flexible_start_resnum() : FloppyTail
• flexible_stop_resnum() : FloppyTail
• flexpack() : flexpack
• flexpep_noprepack1() : flexPepDocking
• flexpep_noprepack2() : flexPepDocking
• flexpep_prepack() : flexPepDocking
• flexpep_score_only() : flexPepDocking
• flexPepDocking() : flexPepDocking
• flexPepDockingMinimizeOnly() : flexPepDocking
• flip_HNQ() : packing
• float_of() : ObjexxFCL
• floating_base() : stepwise::rna
• floating_base_anchor_res() : stepwise::rna
• floops() : ObjexxFCL
• FloppyTail() : FloppyTail
• flxbb() : flxbb
• FMT_DISABLE_CONVERSION_TO_INT() : fmt::internal
• fmt_real() : utility
• FMT_SPECIALIZE_MAKE_UNSIGNED() : fmt::internal
• Fnat() : evaluation
• Fnonnat() : evaluation
• fold_and_dock() : fold_and_dock
• fold_cst() : fold_cst
• fold_from_loops() : fold_from_loops
• fold_tree() : demo::D030_Fold_tree , in::file
• fold_tree_from_silent_file_tag() : rna::denovo
• fold_tree_io() : inout
• foo_all() : utility::py
• foo_all_sp() : utility::py
• forbid_residues() : willmatch
• force_6D_potential_file() : score::loop_close
• force_anti_chi_res_list() : full_model::rna
• force_apix() : edensity
• force_centroid_interaction() : stepwise::rna
• force_cutting_index() : remodel::RemodelLoopMover
• force_cutting_N() : remodel::RemodelLoopMover
• force_enforce_all_waters() : hydrate
• force_linear_fold_tree() : FloppyTail
• force_minimize() : fold_cst
• force_moving_res_for_erraser() : stepwise
• force_mutate_framework_for_cluster() : antibody::design
• force_native_topology() : templates
• force_nonideal_structure() : out::file
• force_north_sugar_list() : full_model::rna
• force_pdb_info_mapping() : constraints
• force_phosphate_instantiation() : stepwise::rna
• force_silent_bitflip_on_read() : in::file
• force_south_sugar_list() : full_model::rna
• force_submotif_without_intervening_bulge() : stepwise::monte_carlo
• force_syn_chi_res_list() : full_model::rna
• force_use_of_cluster_csts_with_outliers() : antibody
• force_user_defined_jumps() : stepwise::rna
• forcePolyAAfragments() : dwkulp
• forest_file() : constraints
• format() : fmt
• format_arg() : fmt , fmt::internal
• format_decimal() : fmt , fmt::internal
• format_system_error() : fmt , fmt::internal
• fraction_by_recombination() : ms
• frag3() : in::file
• frag3_weight() : flexPepDocking
• frag5() : flexPepDocking
• frag5_weight() : flexPepDocking
• frag9() : in::file
• frag9_weight() : flexPepDocking
• frag_1mer_insertion_weight() : cm::hybridize
• frag_files() : dna::specificity , in::file , loops , SSrbrelax
• frag_prefix() : out::file
• frag_res_files() : smhybrid
• frag_size() : rna::denovo
• frag_sizes() : frags , loops , SSrbrelax
• frag_weight_aligned() : cm::hybridize
• fragA() : in::file
• fragAlength() : loodo
• fragAnative() : loodo
• fragB() : in::file
• fragBlength() : loodo
• fragBnative() : loodo
• fragment_contacts() : frags
• fragment_cycles() : rigid
• fragment_homology_rmsd() : rna::denovo
• fragment_store() : indexed_structure_store
• fragment_threshold_distance() : indexed_structure_store
• fragments() : in::path
• fragpdb() : lh::fragpdb
• frags() : frags
• fragsample_patch() : fast_loops
• fragsample_score() : fast_loops
• fragsteal() : templates::fragsteal
• frame() : numeric::kinematic_closure , numeric::kinematic_closure::radians
• frame_rate() : boinc
• free() : optE
• free_2HOprime_bonus() : score::rna
• free_relax() : remodel
• free_residues() : recces::thermal_sampling
• free_side_chain_bonus() : score
• free_sugar_bonus() : score::rna
• free_suite_bonus() : score::rna
• frh_template() : antibody
• frl_template() : antibody
• from_degrees() : numeric::conversions
• from_radians() : numeric::conversions
• from_scratch_frequency() : stepwise::monte_carlo
• from_string() : utility
• Fsol() : patterson
• Fstring::is_type< std::string >() : ObjexxFCL
• Fstring::type_of< std::string >() : ObjexxFCL
• Fstring_of() : ObjexxFCL
• Fstring_of< std::string >() : ObjexxFCL
• full_cache_name() : basic::database
• full_model() : full_model
• full_model_constraints() : stepwise::monte_carlo
• full_name() : basic::database
• fullatom() : in::file , out::file
• fullatom_sfx() : ufv
• fullatom_sfx_patch() : ufv
• fullscreen() : boinc
• function_arguments() : binder
• function_arguments_for_lambda() : binder
• function_arguments_for_py_overload() : binder
• function_pointer_type() : binder
• function_qualified_name() : binder
• fuzz_fragments() : rna::denovo
• fxnal_group() : hotspot