 |
Rosetta
2018.17
|
- g -
- G()
: ObjexxFCL::format
- ga_pack_detect_interface()
: mean_field
- gamma_increment()
: sample_around
- gapspan()
: loops
- gaussian()
: numeric::random
- gaussian_random_xform()
: numeric::random
- gcd()
: numeric
, ObjexxFCL
- gdtmm()
: cluster
, evaluation
- gdttm()
: evaluation
- ge_tol()
: numeric
, ObjexxFCL
- gen_pep_bb_sequential()
: pepspec
- gen_pharmacophore()
: gen_pharmacophore
- gen_reverse_motifs_on_load()
: mh
- general()
: ObjexxFCL::format
- general_dihedral_cst_phi_sd()
: antibody
- general_dihedral_cst_psi_sd()
: antibody
- general_Fstring_of()
: ObjexxFCL
- general_string_of()
: ObjexxFCL
- generate_bindings()
: build
- generate_cmake_file()
: build
- generate_comment_for_declaration()
: binder
- generate_documentation()
: build
- generate_documentation_string_for_declaration()
: binder
- generate_human_readable_documentation()
: utility::xsd_util
- generate_human_readable_recursive()
: utility::xsd_util
- generate_human_readable_summary()
: utility::xsd_util
- generate_include_directives()
: binder
- generate_nonstandard_residue_set()
: pyrosetta
- generate_resfile_from_pdb()
: demo::D050_Packer_task
, pyrosetta::toolbox::generate_resfile
, pyrosetta::toolbox
- generate_resfile_from_pose()
: demo::D050_Packer_task
, pyrosetta::toolbox::generate_resfile
, pyrosetta::toolbox
- generate_rosetta_cmake_files()
: build
- generate_rosetta_external_cmake_files()
: build
- generate_rst_sphinx_files()
: sphinx-doc-generator
- generate_tag_given_options()
: utility::xsd_util
- generate_version_file()
: build
- generations()
: ms
- generic_aa()
: remodel
- generic_job_name()
: jd2
- generous_hbonds()
: bunsat_calc2
- genkic_closure_attempts()
: cyclic_peptide
- genkic_min_solution_count()
: cyclic_peptide
- geom_csts_downstream_output()
: match
- geom_sol_interres_path_distance_cutoff()
: score
- geom_sol_intrares_path_distance_cutoff()
: score
- geometric_constraint_file()
: match
- get()
: fmt::internal
, ObjexxFCL
- get_all_exit_callbacks()
: utility
- get_best_downloader()
: ez_setup
- get_binding_build_root()
: build
- get_boolean_option()
: basic::options
- get_boolean_vector_option()
: basic::options
- get_choice_min_and_max()
: utility::xsd_util
- get_cluster_data()
: numeric
- get_compiler_family()
: build
- get_coord_csts()
: DRRAFTER
- get_coordinates_from_pose()
: pyrosetta::toolbox::numpy_utils
- get_db_session()
: basic::database
- get_decl_dependencies()
: binder
- get_defines()
: build
- get_ends()
: PyMOL-RosettaServer
- get_file_list()
: setup
- get_file_option()
: basic::options
- get_file_vector_option()
: basic::options
- get_filter_names_from_xsd()
: utility::xsd_util
- get_fold_tree_from_silent_file()
: rna::denovo
- get_hbonds()
: pyrosetta::toolbox
- get_home_dir()
: utility::file
- get_int()
: utility::json_spirit
- get_int_or_zero()
: utility::json_spirit
- get_integer_option()
: basic::options
- get_integer_vector_option()
: basic::options
- get_lines_from_file_data()
: utility::io
- get_mArray()
: utility::json_spirit
- get_mObject()
: utility::json_spirit
- get_module_names_from_xsd()
: utility::xsd_util
- get_module_type_as_it_appears_in_xsd()
: utility::xsd_util
- get_mover_names_from_xsd()
: utility::xsd_util
- get_n_cycles()
: DRRAFTER
- get_near_residues()
: DRRAFTER
- get_node_option()
: utility::xsd_util
- get_num_digits()
: utility
- get_option()
: basic::options
- get_option_from_map()
: basic::resource_manager
- get_option_type_from_name()
: utility::xsd_util
- get_package_version()
: setup
- get_patch()
: numeric::interpolation
- get_path_option()
: basic::options
- get_path_vector_option()
: basic::options
- get_percentile_bounds()
: numeric::kdtree
- get_PolycubicSpline_F()
: numeric::interpolation::spline
- get_PolycubicSpline_gradient()
: numeric::interpolation::spline
- get_procs_per_case()
: arls_impl
- get_pymol_chain()
: basic
- get_pymol_chain_index_1()
: basic
- get_pymol_num_unique_ids()
: basic
- get_real()
: utility::json_spirit
- get_Real_MathNTensor_dimension_size()
: numeric
- get_real_option()
: basic::options
- get_real_or_zero()
: utility::json_spirit
- get_real_vector_option()
: basic::options
- get_residue_level_task_operation_names_from_xsd()
: utility::xsd_util
- get_residue_selector_names_from_xsd()
: utility::xsd_util
- get_resnum_and_chain()
: utility
- get_resnum_and_chain_and_segid()
: utility
- get_resnum_and_chain_from_one_tag()
: utility
- get_resnum_and_segid()
: utility
- get_resnum_and_segid_from_one_tag()
: utility
- get_rosetta_include_directories()
: build
- get_rosetta_module_options_from_xsd()
: utility::xsd_util
- get_rosetta_system_include_directories()
: build
- get_scores()
: get_final_ddG_scores
- get_scratch_buff()
: numeric::fourier
- get_secstruct()
: pyrosetta::toolbox
- get_sequences()
: DRRAFTER
- get_set_from_datamap()
: basic::datacache
- get_specific_module_name_as_it_appears_in_xsd()
: utility::xsd_util
- get_ss()
: mutant_modeler
- get_str()
: utility::json_spirit
- get_str_()
: utility::json_spirit
- get_string()
: utility::json_spirit
- get_string_option()
: basic::options
- get_string_or_empty()
: utility::json_spirit
- get_string_vector_option()
: basic::options
- get_surrounding_res()
: util
- get_tag_name()
: utility::xsd_util
- get_task_operation_names_from_xsd()
: utility::xsd_util
- get_test_files()
: self-test
- get_text()
: binder
- get_tmp_buff()
: numeric::fourier
- get_total_res()
: erraser_util
- get_type_dependencies()
: binder
- get_type_name()
: utility::xsd_util
- get_undefined_real()
: utility
- get_undefined_size()
: utility
- get_usage_from_procfilesystem()
: basic
- get_val()
: numeric::interpolation
- get_value()
: utility::json_spirit
, utility::json_spirit::internal_
- getDoxygenPage()
: options_class
- getline()
: ObjexxFCL
, utility::io
- getMapFunction()
: make_templates
- getMarkdownPage()
: options_class
- getpagesize()
: fmt
- getVectorFunction()
: make_templates
- ghost_loops()
: stepwise::protein
- give_up()
: fast_loops
- global_atom_pair_cst_scoring()
: antibody::design
- global_dihedral_cst_scoring()
: antibody::design
- global_optimize()
: stepwise::protein
- global_sample_res_list()
: stepwise::rna
- global_seq_file()
: full_model
- glycam_pdb_format()
: carbohydrates
- glycan_branches()
: carbohydrates::clash_check
- glycan_relax()
: carbohydrates::glycan_relax
- glycan_relax_kt()
: carbohydrates::glycan_relax
- glycan_relax_movie()
: carbohydrates::glycan_relax
- glycan_relax_refine()
: carbohydrates::glycan_relax
- glycan_relax_rounds()
: carbohydrates::glycan_relax
- glycan_relax_test()
: carbohydrates::glycan_relax
- glycan_virtual_offset()
: in
- gpu()
: gpu
- gpu_processor()
: score::fiber_diffraction
- gradnorm()
: numeric::crick_equations
- gradual_constraints()
: rna::denovo
- graft_design_cdrs()
: antibody::design
- graft_h1()
: antibody
- graft_h2()
: antibody
- graft_h3()
: antibody
- graft_l1()
: antibody
- graft_l2()
: antibody
- graft_l3()
: antibody
- grafting_database()
: antibody
- graphics()
: boinc
- grep()
: erraser_util
- grid()
: docking::ligand::grid
- grid_angle_multiplier()
: lh
- grid_boundary()
: match
- grid_dir()
: qsar
- grid_ensemble()
: jd2
- grid_kin()
: docking::ligand::grid
- grid_map()
: docking::ligand::grid
- grid_nsamp_angle()
: matdes::design
- grid_nsamp_radius()
: matdes::design
- grid_phi()
: score::fiber_diffraction
- grid_r()
: score::fiber_diffraction
- grid_reso()
: score::fiber_diffraction
- grid_size_angle()
: matdes::design
- grid_size_radius()
: matdes::design
- grid_space_multiplier()
: lh
- grid_spacing()
: edensity
- grid_vdw_weight()
: rna::denovo
- grid_z()
: score::fiber_diffraction
- gridligpath()
: loodo
- grouper_downstream_rmsd()
: match
- grow_attempts()
: loops
- grp_cpfxn()
: score
- grpelec_context_dependent()
: score
- grpelec_cpfxn_weight()
: score
- grpelec_fade_hbond()
: score
- grpelec_fade_param1()
: score
- grpelec_fade_param2()
: score
- grpelec_fade_type()
: score
- grpelec_max_qeps()
: score
- gt_tol()
: numeric
, ObjexxFCL
- GTPase_residue()
: chemically_conjugated_docking
- GTPasepdb()
: chemically_conjugated_docking
- guarantee_no_DNA()
: in
- guess_disulfides()
: demo::D060_Folding
- gunzip()
: utility::file
- gush()
: basic::options
- gz()
: dump_trajectory
, ms::checkpoint
- gzip()
: utility::file