coupled_moves.cc File Reference

#include <protocols/coupled_moves/CoupledMovesProtocol.hh>
#include <protocols/kinematic_closure/perturbers/FragmentPerturber.hh>
#include <protocols/kinematic_closure/perturbers/WalkingPerturber.hh>
#include <protocols/kinematic_closure/KicMover.hh>
#include <devel/init.hh>
#include <basic/Tracer.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/backrub.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/coupled_moves.OptionKeys.gen.hh>

Functions
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.coupled_moves")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References coupled_moves::bias_sampling(), coupled_moves::boltzmann_kt(), coupled_moves::bump_check(), utility::io::oc::cout, constraints::cst_fa_file(), constraints::cst_fa_weight(), in::path::database(), test.T009_Exceptions::e, coupled_moves::fix_backbone(), in::ignore_unrecognized_res(), devel::init(), coupled_moves::initial_repack(), coupled_moves::ligand_mode(), coupled_moves::ligand_prob(), coupled_moves::ligand_weight(), coupled_moves::mc_kt(), coupled_moves::min_pack(), coupled_moves::mm_bend_weight(), utility::excn::Exception::msg(), my_main(), in::file::native(), out::nstruct(), coupled_moves::ntrials(), OPT, coupled_moves::output_fasta(), coupled_moves::output_prefix(), coupled_moves::output_stats(), out::pdb_gz(), packing::resfile(), coupled_moves::save_sequences(), coupled_moves::save_structures(), TR, coupled_moves::trajectory(), coupled_moves::trajectory_file(), coupled_moves::trajectory_gz(), coupled_moves::trajectory_stride(), and coupled_moves::uniform_backrub().

void* my_main

(

void *

)

References basic::options::OptionKeys::coupled_moves::backbone_mover, basic::options::OptionKeys::coupled_moves::coupled_moves, CREATE_EXCEPTION, basic::options::OptionKeys::loops::frag_files, basic::options::OptionKeys::loops::frag_sizes, basic::options::OptionKeys::coupled_moves::kic_loop_size, basic::options::OptionKeys::coupled_moves::kic_perturber, pyrosetta.utility.array::message, basic::options::OptionKeys::coupled_moves::ntrials, basic::options::OptionKeys::backrub::ntrials, basic::options::option, numeric::remainder(), basic::options::OptionKeys::coupled_moves::repack_neighborhood, basic::Tracer::Reset, basic::options::TR, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::coupled_moves::walking_perturber_magnitude.

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.coupled_moves")

static

Referenced by main().