make_exemplar.cc File Reference

#include <iostream>
#include <iomanip>
#include <fstream>
#include <ostream>
#include <string>
#include <sstream>
#include <cmath>
#include <map>
#include <devel/init.hh>
#include <core/io/pdb/pdb_writer.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/relax.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/pocket_grid.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <core/scoring/Energies.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/after_opts.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <protocols/simple_moves/SuperimposeMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/NoOutputJobOutputter.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/internal_util.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <utility/vector1.hh>
#include <utility/io/ozstream.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/io/mpistream.hh>
#include <protocols/pockets/PocketGrid.hh>

Classes
class	ExemplarMover

Functions
int	main (int argc, char *argv[])
	General testing code. More...

Variables
static basic::Tracer	TR ("apps.public.make_exemplar.main", basic::t_debug)

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

General testing code.

References basic::options::OptionKeys::pocket_grid::central_relax_pdb_num, utility::io::oc::cerr, test.T009_Exceptions::e, ExemplarMover::ExemplarMover(), basic::options::OptionKeys::in::file::fullatom, devel::init(), basic::options::OptionKeys::in::file::movemap, utility::excn::Exception::msg(), NEW_OPT, option, options, basic::options::OptionKeys::docking::ligand::protocol, register_options(), and basic::options::OptionKeys::frags::scoring::scoring.

Variable Documentation

basic::Tracer TR("apps.public.make_exemplar.main", basic::t_debug)

static