analyze_base_pairing.cc File Reference

Analyze base pairing patterns in a silent file. More...

#include <core/types.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/scoring/rna/data/RNA_ChemicalMappingEnergy.hh>
#include <core/pose/rna/RNA_DataInfo.hh>
#include <core/pose/rna/util.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/database/open.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PoseInputStream.fwd.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <core/io/rna/RNA_DataReader.hh>
#include <core/pose/PDBInfo.hh>
#include <protocols/recces/sampler/rna/MC_RNA_Suite.hh>
#include <protocols/recces/sampler/rna/MC_RNA_MultiSuite.hh>
#include <protocols/moves/SimulatedTempering.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/recces/sampler/rna/MC_RNA_KIC_Sampler.hh>
#include <protocols/stepwise/sampler/rna/RNA_KIC_Sampler.hh>
#include <core/id/TorsionID.hh>
#include <protocols/recces/sampler/MC_OneTorsion.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/full_model.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/stepwise.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>

Functions
void	analyze_base_pair_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Detailed Description

Analyze base pairing patterns in a silent file.

Function Documentation

void analyze_base_pair_test

(

)

References basic::options::OptionKeys::chemical::chemical, erraser_single_res_analysis::data, in::file::native(), test.Workshop7test::native_pose, option, options, demo.D010_Pose_structure::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::full_model::rna::rna, in::file::s(), basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::frags::scoring::scoring, in::file::silent(), basic::options::OptionKeys::in::file::silent, out::file::silent(), tag, in::file::tags(), basic::options::OptionKeys::inout::dbms::user, and value.

Referenced by my_main().

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, full_model::cutpoint_open(), test.T009_Exceptions::e, in::file::fasta(), devel::init(), in::file::input_res(), utility::excn::Exception::msg(), my_main(), option, options, in::file::s(), in::file::silent(), in::file::tags(), and score::weights().

void* my_main

(

void *

)

References analyze_base_pair_test(), and utility::options::OptionKeys::options::exit.

Referenced by main().