peptoid_design.cc File Reference

#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueTypeFinder.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <utility/pointer/owning_ptr.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/util.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/minimization_packing/RotamerTrialsMover.hh>
#include <protocols/minimization_packing/TaskAwareMinMover.hh>
#include <protocols/simple_moves/BackboneMover.fwd.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/RandomTorsionMover.hh>
#include <protocols/simple_moves/RandomOmegaFlipMover.hh>
#include <protocols/simple_moves/CyclizationMover.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/ncbb/util.hh>
#include <basic/MetricValue.hh>
#include <core/pose/metrics/CalculatorFactory.hh>
#include <core/pose/metrics/simple_calculators/SasaCalculatorLegacy.hh>
#include <protocols/simple_pose_metric_calculators/NumberHBondsCalculator.hh>
#include <protocols/simple_pose_metric_calculators/BuriedUnsatisfiedPolarsCalculator.hh>
#include <protocols/pose_metric_calculators/PackstatCalculator.hh>
#include <devel/init.hh>
#include <basic/options/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <string>
#include <sstream>

Classes
class	PeptoidDesignMover

Namespaces
	peptoid_design

Typedefs
using	PeptoidDesignMoverOP = utility::pointer::shared_ptr< PeptoidDesignMover >
using	PeptoidDesignMoverCOP = utility::pointer::shared_ptr< const PeptoidDesignMover >

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("PeptoidDesign")
IntegerOptionKey const	peptoid_design::pert_num ("peptoid_design::pert_num")
IntegerOptionKey const	peptoid_design::design_loop_num ("peptoid_design::design_loop_num")
BooleanOptionKey const	peptoid_design::cyclic ("peptoid_design::cyclic")
IntegerVectorOptionKey const	peptoid_design::peptoid_design_positions ("peptoid_design::peptoid_design_positions")

Typedef Documentation

using PeptoidDesignMoverCOP = utility::pointer::shared_ptr<const PeptoidDesignMover>

using PeptoidDesignMoverOP = utility::pointer::shared_ptr<PeptoidDesignMover>

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::io::oc::cout, peptoid_design::cyclic, peptoid_design::design_loop_num, test.T009_Exceptions::e, devel::init(), utility::excn::Exception::msg(), option, peptoid_design::peptoid_design_positions, and peptoid_design::pert_num.

Variable Documentation

basic::Tracer TR("PeptoidDesign")

static

Referenced by PeptoidDesignMover::apply().