simple_cycpep_predict.cc File Reference

Predicts structure of N-to-C cyclic peptides from amino acid sequence. More...

#include <basic/options/option.hh>
#include <basic/options/keys/cyclic_peptide.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/id/TorsionID.hh>
#include <core/id/AtomID.hh>
#include <devel/init.hh>
#include <utility/exit.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <core/pose/PDBInfo.hh>
#include <numeric/conversions.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <numeric/random/random.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <numeric/constants.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/Ramachandran.hh>
#include <core/scoring/ScoringManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/rosetta_scripts/ParsedProtocol.hh>
#include <protocols/filters/BasicFilters.hh>
#include <protocols/protein_interface_design/filters/HbondsToResidueFilter.hh>
#include <protocols/relax/FastRelax.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/scoring/Energies.hh>
#include <protocols/cyclic_peptide_predict/SimpleCycpepPredictApplication.hh>
#include <utility/vector1.hh>
#include <cstdio>

Functions
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.cyclic_peptide.simple_cycpep_predict")

Detailed Description

Predicts structure of N-to-C cyclic peptides from amino acid sequence.

Author

Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu)

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::Tracer::Error, basic::Tracer::flush(), basic::Tracer::TracerProxy::flush(), devel::init(), basic::options::OptionKeys::make_mainchain_potential::output_filename, register_options(), utility::excn::Exception::show(), basic::options::OptionKeys::cyclic_peptide::threads_per_slave, basic::options::TR, and basic::Tracer::visible().

Variable Documentation

basic::Tracer TR("apps.public.cyclic_peptide.simple_cycpep_predict")

static