mutate.cc File Reference

#include <devel/init.hh>
#include <protocols/moves/Mover.hh>
#include <core/conformation/Residue.hh>
#include <protocols/simple_moves/MutateResidue.hh>
#include <apps/benchmark/performance/init_util.hh>
#include <core/types.hh>
#include <numeric/xyzVector.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/AA.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/mutate.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/relax/membrane/util.hh>
#include <basic/Tracer.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/string_util.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <cstdlib>
#include <string>
#include <cmath>
#include <utility/io/util.hh>

Functions
Pose	read_pose ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.mutate")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, test.T009_Exceptions::e, utility::file::file_basename(), utility::file::file_exists(), utility::io::get_lines_from_file_data(), devel::init(), test.T110_Numeric::m, basic::options::OptionKeys::abinitio::membrane, utility::excn::Exception::msg(), basic::options::OptionKeys::mp::mutate_relax::mutant_file, basic::options::OptionKeys::mutate::mutate, basic::options::OptionKeys::mp::mutate_relax::mutation, option, basic::options::OptionKeys::cp::output, basic::options::OptionKeys::in::path::pdb, demo.D010_Pose_structure::pose, basic::options::OptionKeys::stepwise::protein::protein, read_pose(), basic::options::OptionKeys::casp::repack, basic::options::OptionKeys::in::file::s, test.T220_AtomAtomPairEnergies::sfxn, numeric::interpolation::to_string(), TR, basic::options::OptionKeys::sc::trim, basic::options::OptionKeys::inout::dbms::user, and utility_exit_with_message.

Pose read_pose

(

)

References CREATE_EXCEPTION, basic::Tracer::Debug, option, demo.D010_Pose_structure::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::in::file::s, TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

Variable Documentation

basic::Tracer TR("apps.public.mutate")

static

Referenced by main(), and read_pose().