batch_distances.cc File Reference

#include <core/types.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Residue.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <devel/init.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.fwd.hh>
#include <utility/file/FileName.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/james.OptionKeys.gen.hh>
#include <cmath>
#include <cstddef>
#include <iostream>
#include <limits>
#include <string>
#include <utility/excn/Exceptions.hh>

Functions
utility::vector1< int >	calculate_burial (core::pose::Pose &mypose, core::Real const dist_cutoff)
int	main (int argc, char *argv[])

Detailed Description

Author

James Thompson

Christopher Miles (cmile.nosp@m.s@uw.nosp@m..edu)

Function Documentation

utility::vector1< int > calculate_burial	(	core::pose::Pose &	mypose,
		core::Real const	dist_cutoff
	)

References basic::options::OptionKeys::in::file::burial, distance(), basic::options::OptionKeys::frags::j, basic::options::OptionKeys::cmiles::jumping::resi, and basic::options::OptionKeys::cmiles::jumping::resj.

Referenced by main().

int main	(	int	argc,
		char *	argv[]
	)

References ObjexxFCL::format::A(), ObjexxFCL::abs(), james::atom_names(), basic::options::OptionKeys::in::file::burial, calculate_burial(), basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, james::debug(), james::dist_thresholds(), ObjexxFCL::distance(), basic::options::OptionKeys::contactMap::distance_cutoff, test.T009_Exceptions::e, ObjexxFCL::format::F(), utility::file::file_basename(), utility::file_basename(), ObjexxFCL::format::I(), devel::init(), basic::options::OptionKeys::frags::j, test.T110_Numeric::m, max(), james::min_seqsep(), basic::options::OptionKeys::james::min_seqsep, utility::excn::Exception::msg(), option, options, basic::options::OptionKeys::cp::output, demo.D010_Pose_structure::pose, basic::options::OptionKeys::cmiles::jumping::resi, basic::options::OptionKeys::cmiles::jumping::resj, basic::options::OptionKeys::mh::filter::seqsep, and basic::options::OptionKeys::inout::dbms::user.