rna_motif.cc File Reference

check if we can annotate U-turns, A-minor motifs, etc. in an RNA More...

#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/rna/RNA_FilteredBaseBaseInfo.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/rna/RNA_Motif.hh>
#include <core/scoring/rna/RNA_LowResolutionPotential.hh>
#include <core/scoring/TenANeighborGraph.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rna/RNA_ScoringInfo.hh>
#include <core/sequence/util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/import_pose/pose_stream/PoseInputStream.hh>
#include <core/import_pose/pose_stream/PDBPoseInputStream.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/pose/Pose.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <devel/init.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/string.functions.hh>

Functions
void	rna_motif_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("rna_motif")

Detailed Description

check if we can annotate U-turns, A-minor motifs, etc. in an RNA

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add_relevant(), chains, utility::io::oc::cout, test.T009_Exceptions::e, devel::init(), utility::excn::Exception::msg(), my_main(), NEW_OPT, basic::options::option, basic::options::OptionKeys::in::file::s, and basic::options::OptionKeys::in::file::silent.

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, and rna_motif_test().

Referenced by main().

void rna_motif_test

(

)

References chains, basic::options::OptionKeys::chemical::chemical, utility::io::ozstream::close(), utility::io::oc::cout, pyrosetta::create_score_function, basic::options::option, options, demo.D010_Pose_structure::pose, basic::options::OptionKeys::full_model::rna::rna, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::in::file::silent, basic::options::OptionKeys::in::file::tags, basic::options::TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by my_main().

Variable Documentation

basic::Tracer TR("rna_motif")

static