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• __init__() : update_ResidueType_enum_files.EnumInfo
• _add_seq_label() : core::environment::SequenceAnnotation
• _add_weights_from_file() : core::scoring::ScoreFunction
• _add_weights_from_stream() : core::scoring::ScoreFunction
• _assignments() : protocols::noesy_assign::PeakAssignmentResidueMap
• _get_scored_list() : protocols::abinitio::Templates
• _notify_archive() : protocols::jd2::archive::MPIArchiveJobDistributor
• _pmatch() : protocols::noesy_assign::Resonance
• _read_constraints() : protocols::abinitio::Template
• _read_file() : core::io::silent::SilentFileData
• _static_type_name() : core::fragment::BBTorsionAndAnglesSRFD , core::fragment::BBTorsionSRFD , core::fragment::DownJumpSRFD , core::fragment::Frame , core::fragment::JumpingFrame , core::fragment::SecstructSRFD , core::fragment::SingleResidueFragData , core::fragment::UpJumpSRFD , protocols::topology_broker::AsymFoldandDockClaimer , protocols::topology_broker::BasicJumpClaimer , protocols::topology_broker::ConstraintClaimer , protocols::topology_broker::CoordConstraintClaimer , protocols::topology_broker::CutBiasClaimer , protocols::topology_broker::DensityScoringClaimer , protocols::topology_broker::DisulfJumpClaimer , protocols::topology_broker::FibrilModelingClaimer , protocols::topology_broker::FoldandDockClaimer , protocols::topology_broker::FragmentClaimer , protocols::topology_broker::FragmentJumpClaimer , protocols::topology_broker::LoopFragmentClaimer , protocols::topology_broker::MembraneTopologyClaimer , protocols::topology_broker::MetalloClaimer , protocols::topology_broker::PcsEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController , protocols::topology_broker::PseudocontactShiftEnergyController_Ts1 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts2 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts3 , protocols::topology_broker::PseudocontactShiftEnergyController_Ts4 , protocols::topology_broker::RigidChunkClaimer , protocols::topology_broker::SequenceClaimer , protocols::topology_broker::StartStructClaimer , protocols::topology_broker::SymmetryClaimer , protocols::topology_broker::TemplateFragmentClaimer , protocols::topology_broker::TemplateJumpClaimer , protocols::topology_broker::TMHTopologySamplerClaimer
• _write_partner_ids() : protocols::noesy_assign::FloatingResonance
• _write_silent_struct() : core::io::silent::SilentFileData
• _write_to_stream() : protocols::canonical_sampling::MultiTemperatureTrialCounter , protocols::noesy_assign::Resonance