- h -

• H : protocols::ligand_docking::ga_ligand_dock::hbDon
• h : protocols::sic_dock::Rose
• h1_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H1_t_name_ : protocols::antibody::Ab_TemplateInfo
• H1_t_pose_ : protocols::antibody::Ab_TemplateInfo
• h2_ : protocols::fldsgn::topology::HelixPairing , protocols::sic_dock::SICFast
• H2_t_name_ : protocols::antibody::Ab_TemplateInfo
• H2_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_base_library : protocols::antibody_legacy::CDRH3Modeler
• H3_base_library_ : protocols::antibody::H3CterInsert , protocols::antibody_legacy::AntibodyModeler
• h3_base_type_to_enum_ : protocols::antibody::AntibodyEnumManager
• h3_base_type_to_string_ : protocols::antibody::AntibodyEnumManager
• H3_filter_ : protocols::antibody::H3PerturbCCD , protocols::antibody::H3RefineCCD , protocols::antibody_legacy::CDRH3Modeler
• h3_flank_ : protocols::antibody_legacy::CDRH3Modeler
• h3_fraction_ : protocols::antibody::H3PerturbCCD
• h3_loop_csts_hr_ : protocols::antibody::AntibodyModelerProtocol
• h3_loop_csts_lr_ : protocols::antibody::AntibodyModelerProtocol
• h3_no_stem_graft_ : protocols::antibody::GraftCDRLoopsProtocol
• h3_random_cut_ : protocols::antibody_legacy::CDRH3Modeler
• H3_t_name_ : protocols::antibody::Ab_TemplateInfo
• H3_t_pose_ : protocols::antibody::Ab_TemplateInfo
• H3_ter_library_filename_ : protocols::antibody::H3CterInsert
• H5_prime_mode_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• h_ : core::scoring::hbonds::SSWeightParameters , core::scoring::saxs::DistanceHistogram
• H_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• H_chain_ : protocols::antibody::AntibodyInfo
• h_deriv : core::scoring::hbonds::HBondDerivs
• h_ind_ : core::scoring::hbonds::HBDerivAssigner
• H_mult_ : protocols::frag_picker::scores::TalosSSSimilarity
• H_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• HA_atom_id_ : protocols::match::upstream::UpstreamResTypeGeometry
• HA_pos_ : protocols::match::upstream::ProteinBackboneBuildPoint
• hairpin_list_ : core::scoring::Hairpins
• hairpins_ : core::scoring::SS_Killhairpins_Info
• half_bin_width_root_three_ : protocols::match::Bool3DGrid
• half_voxel_size_ : core::pack::guidance_scoreterms::voids_penalty_energy::VoidsPenaltyVoxelGrid
• half_width_ : core::scoring::func::LinearPenaltyFunction
• half_width_dom_ : core::pose::rna::RNA_SuiteName
• half_width_sat_ : core::pose::rna::RNA_SuiteName
• halfdimprods_ : protocols::match::Bool3DGrid
• halfdimsizes_ : protocols::match::Bool3DGrid
• halt_on_error_ : protocols::matdes::SchemePlaceMotifsMover
• hamiltonians_ : protocols::canonical_sampling::HamiltonianExchange
• handedness_score_ : protocols::simple_filters::SheetFilter
• handedness_score_flag_ : core::scoring::SecondaryStructureWeights
• handle_suites_ : protocols::rna::movers::RNAIdealizeMover
• hard_crossover_ : core::scoring::etable::etrie::TrieCountPairGeneric
• hard_scorefxn_ : protocols::ligand_docking::LigandBaseProtocol
• harmonic_ca_cst_std_dev : protocols::simple_moves::ShakeStructureMover
• Haro_index_ : core::chemical::ResidueType
• has_alphas_ : protocols::fold_from_loops::NubInitioMover
• has_antigen_ : protocols::antibody::AntibodyInfo
• has_been_initialized_ : protocols::multistage_rosetta_scripts::MRSJobQueen
• has_been_initialized_from_task_ : core::pack::annealer::SmartFixbbSimAnnealer
• has_betas_ : protocols::fold_from_loops::NubInitioMover
• has_bind : protocols::ligand_docking::ProtLigPair_info
• has_binder_ : protocols::fold_from_loops::utils::Nub
• has_child_ : protocols::canonical_sampling::mc_convergence_checks::HPool_RMSD
• has_constraints : protocols::forge::remodel::LineObject
• has_coords_ : core::fragment::BBTorsionSRFD
• has_cst_energies_ : protocols::ligand_docking::ga_ligand_dock::GridScorer
• has_custom_variant_types_ : core::chemical::ResidueProperties
• has_design_info_ : protocols::forge::remodel::RemodelData
• has_exocyclic_linkage_ : core::conformation::carbohydrates::GlycanNode
• has_exocyclic_linkage_to_child_mainchain_ : core::chemical::carbohydrates::CarbohydrateInfo
• has_finished_ : protocols::jd2::archive::Batch
• has_inherent_position : core::chemical::carbohydrates::SugarModificationsNomenclatureTableRow
• has_just_simple_cycles_ : core::scoring::loop_graph::LoopGraph
• has_key_ : protocols::frag_picker::VallChunk
• has_ligand_ : protocols::forge::remodel::RemodelMover::instruction_flags
• has_mirror_symm_ : core::pack::interaction_graph::ResidueArrayAnnealingEvaluator
• has_ncaa : protocols::forge::remodel::LineObject
• has_path_ : protocols::motifs::Motif
• has_physical_cut : protocols::environment::claims::JumpElement
• has_polymer_dependent_groups_ : core::chemical::ResidueType
• has_pore_ : core::conformation::membrane::ImplicitLipidInfo
• has_pseudobonds_ : core::scoring::trie::CPDataCorrespondence
• has_range1_lower_ : core::conformation::symmetry::SymDof
• has_range1_upper_ : core::conformation::symmetry::SymDof
• has_range2_lower_ : core::conformation::symmetry::SymDof
• has_range2_upper_ : core::conformation::symmetry::SymDof
• has_remark_ : protocols::motifs::Motif
• has_silent_in_ : protocols::jd2::archive::Batch
• has_valid_moves_ : protocols::hybridization::ChunkTrialMover
• has_waters_ : core::scoring::lkball::LKB_ResidueInfo
• hASA_to_score_ : core::pack::interaction_graph::SurfacePotential
• hash_ : protocols::environment::AutoCutData , protocols::legacy_sewing::SewSegment , protocols::loophash::LoopHashLibrary , protocols::loophash::LoopHashMap , protocols::match::HitNeighborFinder , protocols::match::MatchCounter , protocols::match::MatchOutputTracker , protocols::match::OccupiedSpaceHash , protocols::mean_field::ResHashMap
• hash_between_termini : protocols::sewing::hashing::HasherSettings
• hash_edge_pool_ : protocols::legacy_sewing::SewGraph
• hash_file_names_ : protocols::ligand_docking::WriteLigandMolFile
• hash_grid_ : protocols::ligand_docking::ga_ligand_dock::GridScorer
• hash_id : protocols::indexed_structure_store::FragmentStore
• hash_map_ : protocols::legacy_sewing::Hasher , protocols::sewing::hashing::Hasher
• hash_pose1_ : protocols::sic_dock::CBScore , protocols::sic_dock::scores::MotifHashRigidScore
• hash_size_ : core::pack::annealer::FASTERAnnealer
• hash_sizes_ : protocols::loophash::LoopHashLibrary
• hash_starting_positions_ : protocols::ligand_docking::StartFrom
• hash_subgrid_ : protocols::ligand_docking::ga_ligand_dock::GridScorer
• hashed_ : protocols::sewing::movers::AssemblyMover
• hasher : core::kinematics::FoldTree , protocols::abinitio::IterativeBase
• hasher_ : core::scoring::motif::MotifHash , core::scoring::motif::XformScore , core::scoring::motif::XfragSet
• hasher_settings_ : protocols::sewing::hashing::AlignmentGenerator , protocols::sewing::hashing::BasisMapGenerator , protocols::sewing::hashing::EdgeMapGenerator , protocols::sewing::hashing::Hasher
• hashin_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hashout_fname_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hashsize_ : protocols::ligand_docking::ga_ligand_dock::GALigandDock
• hasInsertion : protocols::forge::remodel::RemodelWorkingSet
• have_contributed_deltaE_following_perturbation_ : core::pack::interaction_graph::FASTEREdge , core::pack::interaction_graph::FASTERNode
• have_cst_ : core::scoring::methods::CustomAtomPairEnergy
• have_native_pose_ : protocols::loop_modeling::utilities::TrajectoryLogger
• have_not_committed_last_substitution_ : core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• have_prepared_for_simA_ : core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
• have_prepared_once_for_FASTER_ : core::pack::interaction_graph::FASTERNode
• have_relaxed_since_neighbors_perturbation_ : core::pack::interaction_graph::FASTERNode
• hb_bb_ : core::scoring::motif::ResPairMotif
• hb_bb_sc_ : core::scoring::motif::ResPairMotif
• hb_chem_type_ : core::scoring::hbonds::hbtrie::HBAtom
• hb_database : protocols::constel::HBondCommon
• hb_database_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::geometric_solvation::GeometricSolEnergyEvaluator , core::scoring::geometric_solvation::WaterWeightGridSet , core::scoring::WaterAdductHBondPotential , protocols::dna::RotamerDNAHBondFilter , protocols::hbnet::HBNet , protocols::ligand_docking::ga_ligand_dock::GridScorer , protocols::pose_metric_calculators::SemiExplicitWaterUnsatisfiedPolarsCalculator
• HB_DHO_AngleList : protocols::sparta::PDB
• hb_e_cutoff_ : protocols::simple_filters::SimpleHbondsToAtomFilter
• hb_eval_tuples_ : protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hb_fade_energy : core::init::pre_talaris_2013_behavior_settings
• hb_filter : protocols::flexpep_docking::FlexPepDockingFlags
• HB_HOA_AngleList : protocols::sparta::PDB
• hb_sc_ : core::scoring::motif::ResPairMotif
• hb_sp2_chipen : core::init::pre_talaris_2013_behavior_settings
• hb_sp2_outer_width : core::init::pre_talaris_2013_behavior_settings
• hbacceptors_ : protocols::ligand_docking::ga_ligand_dock::GridScorer
• HBDistList : protocols::sparta::PDB
• hbdonors_ : protocols::ligand_docking::ga_ligand_dock::GridScorer
• HBEnergyList : protocols::sparta::PDB
• HBFadeInterval_lookup_ : core::scoring::hbonds::HBondDatabase
• HBFadeInterval_lookup_by_name_ : core::scoring::hbonds::HBondDatabase
• hbnet_bonus_ramping_function_ : core::scoring::methods::EnergyMethodOptions
• hbnet_max_network_size_ : core::scoring::methods::EnergyMethodOptions
• hbond_acceptor_limit_ : protocols::ligand_docking::HBondAcceptorFilter
• hbond_bb_pair_score_ : core::scoring::dssp::Dssp
• hbond_bonus_opt_ : core::pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenalty
• hbond_cutoff_ : protocols::cyclic_peptide::PeptideInternalHbondsFilter
• hbond_database_ : core::pack::interaction_graph::NPDHBondInteractionGraph< V, E, G > , core::pack::interaction_graph::NPDHBSimpleInteractionGraph , protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_default_ : protocols::hbnet::HBNet
• hbond_disallow_ : protocols::hbnet::HBNet
• hbond_disallow_default_ : protocols::hbnet::HBNet
• hbond_donor_limit_ : protocols::ligand_docking::HBondDonorFilter
• hbond_E_fraction : protocols::analysis::InterfaceData
• hbond_energy_cutoff_ : protocols::cyclic_peptide::OversaturatedHbondAcceptorFilter , protocols::cyclic_peptide::PeptideInternalHbondsMetric , protocols::cyclic_peptide_predict::SimpleCycpepPredictApplication , protocols::hbnet::UnsatSelector , protocols::residue_selectors::HBondSelector
• hbond_energy_shift_ : core::scoring::hbonds::HBondOptions
• hbond_energy_threshold_ : core::pack::guidance_scoreterms::approximate_buried_unsat_penalty::ApproximateBuriedUnsatPenalty , core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraphOptions , protocols::protein_interface_design::movers::DesignMinimizeHbonds
• hbond_graph_ : core::pack::hbonds::HBondGraphInitializerIG , protocols::hbnet::HBNet
• hbond_measure_sp3acc_BAH_from_hvy : core::init::pre_talaris_2013_behavior_settings
• hbond_metric_ : protocols::cyclic_peptide::PeptideInternalHbondsFilter
• hbond_options_ : core::pack::guidance_scoreterms::buried_unsat_penalty::BuriedUnsatPenalty , core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraph , core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyNodeData , core::pack::interaction_graph::NPDHBondInteractionGraph< V, E, G > , core::pack::interaction_graph::NPDHBSimpleInteractionGraph , core::scoring::methods::EnergyMethodOptions , protocols::stepwise::modeler::polar_hydrogens::PolarHydrogenPacker
• hbond_params : core::init::pre_talaris_2013_behavior_settings
• hbond_set : protocols::hbnet::HBondNetStruct
• hbond_set_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::rna::data::RNA_DMS_Potential , protocols::ligand_docking::rdf::RDFHbondFunction , protocols::pose_metric_calculators::SHOBuriedUnsatisfiedPolarsCalculator
• hbond_threshold_ : core::pack::hbonds::HBondGraphInitializerIG , protocols::hbnet::HBNetScore
• hbond_vec : protocols::hbnet::HBondNetStruct
• hbond_wtd_ : protocols::ligand_docking::ga_ligand_dock::ReweightableRepEnergy
• hbonding_to_res_ : core::pack::interaction_graph::NPDHBondInteractionGraph< V, E, G > , core::pack::interaction_graph::NPDHBSimpleInteractionGraph
• hbondoptions_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy , core::scoring::geometric_solvation::WaterWeightGridSet , core::scoring::WaterAdductHBondPotential , protocols::dna::RotamerDNAHBondFilter
• hbonds_ : core::scoring::hbonds::graph::HBondEdge , core::scoring::hbonds::HBondSet , protocols::cyclic_peptide_predict::HierarchicalHybridJD_JobResultsSummary
• hbonds_energy_cutoff_ : protocols::simple_filters::InterfaceHbondsFilter
• hbonds_graph_ : core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
• hbonds_graph_last_accepted_ : core::pack::guidance_scoreterms::hbnet_energy::HBNetEnergy
• hbonds_list_ : core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyEdgeData
• hbonds_num_threshold_ : protocols::simple_filters::InterfaceHbondsFilter
• hbonds_queue_ : core::pack::interaction_graph::NPDHBondInteractionGraph< V, E, G > , core::pack::interaction_graph::NPDHBSimpleInteractionGraph
• HBPoly1D_lookup_ : core::scoring::hbonds::HBondDatabase
• HBPoly1D_lookup_by_name_ : core::scoring::hbonds::HBondDatabase
• hbs_post_pos_ : protocols::simple_moves::a3b_hbs::A3BHbsPatcher , protocols::simple_moves::hbs::HbsPatcher
• hbs_pre_pos_ : protocols::simple_moves::a3b_hbs::A3BHbsPatcher , protocols::simple_moves::hbs::HbsPatcher
• hcut_ : protocols::hybridization::DDomainParse , protocols::hybridization::HybridizeProtocol
• HDX_data_defined_ : core::scoring::methods::D2H_SA_Energy
• he : protocols::sic_dock::XfoxmScore
• header : protocols::wum::WorkUnitBase
• header_ : core::io::StructFileRep , protocols::peptide_deriver::PeptideDeriverMarkdownStreamOutputter
• header_file : update_ResidueType_enum_files.EnumInfo
• header_information_ : core::pose::PDBInfo
• headgroup_type_ : core::conformation::membrane::ImplicitLipidInfo
• heat_after_cycles_ : protocols::moves::MonteCarlo
• heavy_atom_limit_ : protocols::ligand_docking::HeavyAtomFilter
• heavy_chain : protocols::task_operations::RestrictToCDRH3Loop
• heavy_coords_ : core::conformation::UltraLightResidue
• heavyatom_has_polar_hydrogens_ : core::chemical::ResidueType
• heavyatom_index_ : core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraphHbondDonorAcceptorGroup
• hedge_archive_ : protocols::abinitio::IterativeBase
• height : core::scoring::sc::_PROBE
• helical_sigOffAxisR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigOffAxisT : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigR : protocols::rbsegment_relax::RBSegmentRelax
• helical_sigT : protocols::rbsegment_relax::RBSegmentRelax
• helical_substruct_res_ : core::import_pose::options::RNA_FragmentMonteCarloOptions
• helical_substructs_ : core::import_pose::options::RNA_FragmentMonteCarloOptions , core::import_pose::RNA_DeNovoSetup , protocols::rna::denovo::movers::RNA_DeNovoProtocolMover
• helices_ : core::scoring::SS_Info , protocols::fldsgn::topology::SS_Info2 , protocols::helical_bundle_predict::HBPHelixAssignments , protocols::rbsegment_relax::IdealizeHelicesMover
• helix : protocols::fldsgn::topology::TripletID
• helix2hss_ : protocols::fldsgn::topology::HSSTripletSet
• helix_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet , protocols::nonlocal::HelixRotate
• helix_assignment_file_ : protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
• helix_assignment_file_contents_ : protocols::helical_bundle_predict::HelicalBundlePredictApplicationOptions
• helix_boundaries_ : protocols::hbnet::HBNetStapleInterface
• helix_cap_dist_cutoff_ : protocols::features::helixAssembly::HelixBundleFeatures
• helix_cycle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• helix_end_ : protocols::fldsgn::filters::HelixKinkFilter , protocols::membrane::benchmark::MakeCanonicalHelix
• helix_ends_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_ends_final_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_id_ : core::scoring::MembraneTopology , protocols::fldsgn::filters::HelixBendFilter , protocols::fldsgn::filters::StrandHelixGeometryFilter , protocols::fldsgn::topology::SS_Info2
• helix_length_ : protocols::helical_bundle::MakeBundleHelix
• helix_name : core::io::HELIXInformation
• helix_num_1_ : protocols::simple_filters::HelixHelixAngleFilter
• helix_num_2_ : protocols::simple_filters::HelixHelixAngleFilter
• helix_pairings_ : protocols::abinitio::TemplateJumpSetup , protocols::fldsgn::topology::HelixPairingSet , protocols::parser::BluePrint
• helix_regions_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_regions_jumps_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_regions_jumps_final_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_regions_with_jumps_and_ends_ : protocols::rna::denovo::movers::RNA_HelixMover
• helix_start_ : protocols::fldsgn::filters::HelixKinkFilter , protocols::membrane::benchmark::MakeCanonicalHelix
• helix_start_positions_ : protocols::helix_capper::HelixNCapperMover
• helixClass : core::io::HELIXInformation
• helixID : core::io::HELIXInformation
• HELIXInformations_ : core::io::StructFileRep
• helixjump_pick_list_ : protocols::abinitio::Templates
• HelixMoveSet_ : protocols::rbsegment_relax::RBSegmentRelax
• help_ : protocols::forge::remodel::RemodelMover::instruction_flags
• hetatm_prot_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• hetatm_self_cst_weight_ : protocols::hybridization::FoldTreeHybridize , protocols::hybridization::HybridizeProtocol
• heterogen_formulae_ : core::io::StructFileRep
• heterogen_names_ : core::io::StructFileRep
• heterogen_synonyms_ : core::io::StructFileRep
• hfr_ : protocols::antibody_legacy::Antibody
• Hfr_t_name_ : protocols::antibody::Ab_TemplateInfo
• hh : protocols::sic_dock::XfoxmScore
• hh_align_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hh_align_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• HH_cutoff_ : core::scoring::NeighborList
• HH_cutoff_wide_ : core::scoring::NeighborList
• HH_helix_end : core::scoring::Helices
• hh_pair_ : protocols::fldsgn::potentials::SetSecStructEnergies
• HH_resnum : core::scoring::Helices
• hh_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hh_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hhpot_ : protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• hi_poly_ : core::scoring::etable::coulomb::Coulomb
• hi_poly_end2_ : core::scoring::etable::coulomb::Coulomb
• hi_poly_end_ : core::scoring::etable::coulomb::Coulomb
• hi_poly_start2_ : core::scoring::etable::coulomb::Coulomb
• hi_poly_start_ : core::scoring::etable::coulomb::Coulomb
• high : protocols::cryst::CheshireCell , protocols::make_rot_lib::TorsionRange
• high_ : core::scoring::func::SmoothStepFunc
• high_color_ : protocols::qsar::RenderGridsToKinemage
• high_cst_ : protocols::antibody::AntibodyModelerProtocol , protocols::antibody::H3RefineCCD , protocols::antibody_legacy::CDRH3Modeler
• high_entropy_rms_cutoff_ : protocols::optimize_weights::PNatStructureOptEData
• high_hbond_weight_multiplier_ : protocols::cyclic_peptide_predict::SimpleCycpepPredictApplication
• high_mem_mode_ : protocols::antibody::AntibodyDatabaseManager
• high_move_temp_ : protocols::antibody::H3RefineCCD
• high_res_angstroms_ : protocols::ligand_docking::LigandArea
• high_res_degrees_ : protocols::ligand_docking::LigandArea
• high_res_kink_constraint_ : protocols::antibody::snugdock::SnugDock , protocols::antibody::snugdock::SnugDockProtocol
• high_resolution_step_ : protocols::antibody::snugdock::SnugDock
• high_temp_ : core::pack::task::PackerTask_ , protocols::task_operations::ModifyAnnealer
• highAddRes_ : protocols::pose_length_moves::InsertResMover
• higher_d77_pert_mode_ : protocols::ub_e2c::ubi_e2c_modeler
• higher_numbered_node_symmetry_copy_index_ : core::pack::guidance_scoreterms::buried_unsat_penalty::graph::BuriedUnsatPenaltyGraphHbond
• highest_job_index_ : protocols::jd2::JobsContainer
• highest_tmpl_resnum_ : protocols::hybridization::ChunkTrialMover
• highres_ : protocols::docking::membrane::MPDockingMover
• highres_conformer_filter_type_ : core::scoring::nmr::NMRSpinlabel
• highres_filter_ : protocols::docking::DockingProtocol
• highres_reference_energies_ : protocols::docking::DockingEnsemble
• highres_scorefxn_ : protocols::antibody::H3RefineCCD , protocols::antibody_legacy::CDRH3Modeler , protocols::antibody_legacy::LoopRlxMover , protocols::docking::membrane::MPDockingMover , protocols::seeded_abinitio::SegmentHybridizer
• hightemp : core::pack::annealer::SimAnnealerBase
• hightemp_ : core::pack::annealer::SimAnnealerBase
• highval_ : protocols::match::downstream::AtomGeometrySecMatchRPE
• hires_score_ : protocols::protein_interface_design::movers::LoopMoverFromCommandLine , protocols::protein_interface_design::movers::LoopRemodel
• hires_scorefxn_ : protocols::protein_interface_design::movers::PlaceOnLoop , protocols::rna::denovo::movers::RNA_DeNovoProtocolMover , protocols::rna::denovo::RNA_DeNovoProtocol , protocols::rna::denovo::RNA_FragmentMonteCarlo
• his_can_be_pi_ : core::scoring::methods::ArgCationPiEnergy
• his_tyr_ : protocols::hbnet::HBNetStapleInterface
• hist_ : protocols::recces::Histogram
• hist_list_ : protocols::recces::RECCES_Mover
• histogram_files_ : protocols::nmr::pre::PREMover
• histogram_max_ : protocols::recces::options::RECCES_Options
• histogram_min_ : protocols::recces::options::RECCES_Options
• histogram_spacing_ : protocols::recces::options::RECCES_Options
• histogram_vector_ : core::scoring::orbitals::OrbitalsStatistics
• histograms_ : protocols::simple_moves::DOFHistogramRecorder
• history_ : protocols::hybridization::TemplateHistory , protocols::monte_carlo::GenericSimulatedAnnealer
• history_size_ : core::pack::task::operation::EnableMultiCoolAnnealer
• hit_cacher_ : protocols::match::output::SameChiBinComboGrouper , protocols::match::output::SameSequenceGrouper
• hit_data_ : protocols::match::downstream::TargetRotamerCoords
• hit_hashes_ : protocols::match::HitHasher
• hit_score_cutoff_ : protocols::stepwise::modeler::align::StepWiseLegacyClusterer , protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
• hits_ : protocols::match::Matcher
• hits_for_focused_geomcst_and_build_point_begin_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_and_build_point_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hits_for_focused_geomcst_end_ : protocols::match::downstream::SecondaryMatcherToDownstreamResidue
• hl : protocols::sic_dock::XfoxmScore
• Hmatrices : core::kinematics::jacobian::ModuleType1::screw_construct_struct
• HN_S2 : protocols::sparta::PDB
• ho2prime_index_ : core::chemical::rna::RNA_Info
• hoh_ref_score_ : core::scoring::magnesium::MgEnergy
• hoist_angle_degrees_ : protocols::legacy_sewing::Model
• holes2atype_ : core::scoring::packing::HolesParams
• HOMO_Tab : protocols::sparta::Sparta::SpartaLib
• homoFileName : protocols::sparta::Sparta::SpartaLib
• homologs_ : protocols::loophash::BackboneDB
• homology_exclusion_ : protocols::rna::denovo::movers::RNA_FragmentMover
• homooligomer_swap_ : protocols::energy_based_clustering::EnergyBasedClusteringOptions
• hoog_edge_paired_ : core::scoring::rna::data::RNA_DMS_LowResolutionPotential
• host : protocols::network::NetworkQueue::ServerAddress
• host_chain_ : protocols::protein_interface_design::filters::StubScoreFilter , protocols::protein_interface_design::movers::BestHotspotCstMover , protocols::protein_interface_design::movers::PlacementAuctionMover , protocols::protein_interface_design::movers::PlacementMinimizationMover , protocols::protein_interface_design::movers::PlaceOnLoop , protocols::protein_interface_design::movers::PlaceSimultaneouslyMover , protocols::protein_interface_design::movers::PlaceStubMover , protocols::protein_interface_design::movers::SetAtomTree
• hotspot_distcb_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filenames_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_filter : protocols::flexpep_docking::FlexPepDockingFlags
• hotspot_filter_ : protocols::protein_interface_design::movers::HotspotHasherMover
• hotspot_length_ : protocols::hotspot_hashing::HotspotStubSet
• hotspot_score_weight_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hotspot_stub_set_ : protocols::protein_interface_design::movers::SetupHotspotConstraintsLoopsMover , protocols::protein_interface_design::movers::SetupHotspotConstraintsMover
• hotspotcst_filter_ : protocols::protein_interface_design::movers::DockWithHotspotMover
• hpairpot_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hpairset_ : protocols::fldsgn::filters::HelixPairingFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential
• hpairset_name_ : protocols::fldsgn::topology::HelixPairingSet
• hpatch_energy_alternate_state_assignment_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_energy_current_state_assignment_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• HPATCH_SCORE_BIN_SIZE : core::pack::interaction_graph::SurfacePotential
• hpatch_score_min_last_100_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_score_min_recent_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hpatch_score_weight_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• hphobe_ats_ : core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
• hphobe_ats_for_restype_group_ : core::pack::interaction_graph::HPatchNode< V, E, G >
• Hpol_index_ : core::chemical::ResidueType
• Hpos_apolar_ : core::chemical::ResidueType
• Hpos_polar_ : core::chemical::ResidueType
• Hpos_polar_sc_ : core::chemical::ResidueType
• hrf_dynamics_input_ : core::scoring::methods::EnergyMethodOptions
• hrf_dynamics_input_file_ : core::scoring::methods::HRFDynamicsEnergy
• hs1_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs1_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs2_dist_ : protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs2_orient_ : protocols::fldsgn::topology::HSSTriplet
• hs_angle_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif , protocols::fldsgn::topology::HSSTriplet
• hs_angle_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_angle_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential , protocols::fldsgn::topology::BetaAlphaBetaMotif
• hs_dist_sigma2_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dist_wts_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_dp_ : core::scoring::SecondaryStructurePotential
• hs_pair_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hs_scores_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hs_weight_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hsheet_dist_ : protocols::fldsgn::topology::HSSTriplet
• hsheet_dist_repulsive_ : protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hsheet_elev_angle_ : protocols::fldsgn::topology::BetaAlphaBetaMotif
• hspot_ : protocols::fldsgn::potentials::SetSecStructEnergies , protocols::fldsgn::potentials::sspot::NatbiasSecondaryStructureEnergy
• hss3set_ : protocols::fldsgn::filters::HSSTripletFilter , protocols::fldsgn::potentials::sspot::NatbiasHelicesSheetPotential
• hss_triplet_ : protocols::fldsgn::potentials::SetSecStructEnergies
• hss_triplets_ : protocols::fldsgn::topology::HSSTripletSet , protocols::parser::BluePrint
• ht_for_chitip_atoms_ : protocols::match::upstream::UpstreamResTypeGeometry
• htransform_ : core::conformation::symmetry::SymmetryTransform
• hurry_ : protocols::protein_interface_design::movers::LoopRemodel , protocols::protein_interface_design::movers::PlaceStubMover , protocols::symmetric_docking::SymDockProtocol
• hxl_tors_potential_ : core::scoring::ScoringManager
• hybrid_protocol_ : protocols::carbohydrates::GlycanTreeModeler
• hybridization_ : core::chemical::AtomType , core::chemical::gasteiger::GasteigerAtomTypeData , core::chemical::orbitals::OrbitalType
• hybridization_type2name_ : core::scoring::hbonds::HBondTypeManager
• hyd_ : protocols::membrane::scoring::MEnvAtomParams
• hyd_deriv_ : protocols::membrane::scoring::MEnvAtomParams
• hydrate_ : protocols::magnesium::MgScanner
• hydrate_all_ : protocols::hydrate::Hydrate
• hydrate_magnesiums_ : protocols::stepwise::options::StepWiseBasicOptions
• hydrogen_bond_threshold_ : protocols::hbnet::HBNet
• hydrogen_interaction : core::scoring::etable::EtableParamsOnePair
• hydrogen_interaction_cutoff2_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::EtableEvaluator , core::scoring::vdwaals::VDW_Energy , core::scoring::vdwaals::VDWTrieEvaluator
• hydrophobic_ : protocols::simple_filters::InterfaceSasaFilter , protocols::simple_filters::TotalSasaFilter
• hydrophobic_constraint_strength_ : protocols::aa_composition::AddHelixSequenceConstraintsMover
• hydrophobic_residue_contacts_threshold_ : protocols::simple_filters::InterfaceHydrophobicResidueContactsFilter
• hydrophobic_residues_ : protocols::denovo_design::filters::ExposedHydrophobicsFilter
• hydrophobic_sasa_ : protocols::cyclic_peptide_predict::HierarchicalHybridJD_SASASummary
• hydroxyl_wants_h : core::pack::guidance_scoreterms::approximate_buried_unsat_penalty::UnsatCorrectionOptions
• hydroxyls_must_donate_ : protocols::hbnet::HBNet