FragmentAssemblyMover Class Reference

Public Member Functions
	FragmentAssemblyMover ()
void	run ()
core::Real	score (bool)
virtual std::string	get_name () const

Private Attributes
core::Real	overlap_wt_
core::Real	clash_wt_
core::Real	close_wt_
core::Real	dens_wt_
core::Real	null_frag_
utility::vector1< FragID >	allfrags
std::map< FragID, int >	frag2idx
utility::vector1< utility::vector1< int > >	pos2frags
utility::vector1< int >	assigned_frags
utility::vector1< utility::vector1< float > >	scores_2b
utility::vector1< core::Real >	scores_1b
utility::vector1< core::Real >	rmses
utility::vector1< utility::vector1< float > >	clash2b
utility::vector1< utility::vector1< float > >	overlap2b
utility::vector1< utility::vector1< float > >	close2b

Constructor & Destructor Documentation

FragmentAssemblyMover()

FragmentAssemblyMover::FragmentAssemblyMover

(

)

References option, and basic::options::OptionKeys::inout::dbms::user.

Member Function Documentation

get_name()

virtual std::string FragmentAssemblyMover::get_name ( ) const

inlinevirtual

run()

void FragmentAssemblyMover::run

(

)

References debug_assert, build_jacobian::distance, ObjexxFCL::end(), detail::find(), create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, basic::options::OptionKeys::in::in, enumerate_junctions::int, subloop_histogram::iterator, min(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, create_a3b_hbs::nres, local::nstruct, out::nstruct(), option, test.T008_Serialization::oss, lactamize::outfile, make_symmdef_file_denovo::pos, ObjexxFCL::pow(), numeric::random::random_range(), ObjexxFCL::right_string_of(), create_a3b_hbs::score, extract_by_sidechain_sasa_score::scorefile, sfd, in::file::silent(), out::file::silent(), test_mm_lj::step, tag, erraser_analysis::temp, TR, numeric::random::uniform(), and basic::options::OptionKeys::inout::dbms::user.

Referenced by main().

score()

core::Real FragmentAssemblyMover::score

(

bool

verbose = false

)

References create_a3b_hbs::i, create_a3b_hbs::j, create_a3b_hbs::nres, TR, and basic::options::OptionKeys::sc::verbose.

Member Data Documentation

allfrags

utility::vector1< FragID > FragmentAssemblyMover::allfrags

private

assigned_frags

utility::vector1<int> FragmentAssemblyMover::assigned_frags

private

clash2b

utility::vector1< utility::vector1< float > > FragmentAssemblyMover::clash2b

private

clash_wt_

core::Real FragmentAssemblyMover::clash_wt_

private

close2b

utility::vector1< utility::vector1< float > > FragmentAssemblyMover::close2b

private

close_wt_

core::Real FragmentAssemblyMover::close_wt_

private

dens_wt_

core::Real FragmentAssemblyMover::dens_wt_

private

frag2idx

std::map< FragID, int > FragmentAssemblyMover::frag2idx

private

null_frag_

core::Real FragmentAssemblyMover::null_frag_

private

overlap2b

utility::vector1< utility::vector1< float > > FragmentAssemblyMover::overlap2b

private

overlap_wt_

core::Real FragmentAssemblyMover::overlap_wt_

private

pos2frags

utility::vector1< utility::vector1<int> > FragmentAssemblyMover::pos2frags

private

rmses

utility::vector1<core::Real> FragmentAssemblyMover::rmses

private

scores_1b

utility::vector1<core::Real> FragmentAssemblyMover::scores_1b

private

scores_2b

utility::vector1< utility::vector1< float > > FragmentAssemblyMover::scores_2b

private

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The documentation for this class was generated from the following file:

• src/apps/public/electron_density/denovo_density.cc