out Namespace Reference

Namespaces
	file
	path

Functions
BooleanOptionKey const	out ("out")
BooleanOptionKey const	overwrite ("out:overwrite")
IntegerOptionKey const	nstruct ("out:nstruct")
IntegerOptionKey const	shuffle_nstruct ("out:shuffle_nstruct")
StringOptionKey const	prefix ("out:prefix")
StringOptionKey const	suffix ("out:suffix")
BooleanOptionKey const	mover_controlled_output_name ("out:mover_controlled_output_name")
BooleanOptionKey const	no_nstruct_label ("out:no_nstruct_label")
BooleanOptionKey const	pdb_gz ("out:pdb_gz")
BooleanOptionKey const	pdb ("out:pdb")
BooleanOptionKey const	silent_gz ("out:silent_gz")
BooleanOptionKey const	membrane_pdb ("out:membrane_pdb")
RealOptionKey const	membrane_pdb_thickness ("out:membrane_pdb_thickness")
BooleanOptionKey const	mmCIF ("out:mmCIF")
BooleanOptionKey const	mmCIF_gz ("out:mmCIF_gz")
BooleanOptionKey const	mmtf ("out:mmtf")
BooleanOptionKey const	mmtf_gz ("out:mmtf_gz")
BooleanOptionKey const	use_database ("out:use_database")
IntegerOptionKey const	database_protocol_id ("out:database_protocol_id")
StringVectorOptionKey const	database_filter ("out:database_filter")
IntegerVectorOptionKey const	resume_batch ("out:resume_batch")
BooleanOptionKey const	nooutput ("out:nooutput")
BooleanOptionKey const	output ("out:output")
RealOptionKey const	scorecut ("out:scorecut")
BooleanOptionKey const	show_accessed_options ("out:show_accessed_options")
BooleanOptionKey const	show_unused_options ("out:show_unused_options")
FileOptionKey const	sf ("out:sf")
StringVectorOptionKey const	mute ("out:mute")
StringVectorOptionKey const	unmute ("out:unmute")
IntegerOptionKey const	level ("out:level")
StringVectorOptionKey const	levels ("out:levels")
BooleanOptionKey const	no_color ("out:no_color")
BooleanOptionKey const	chname ("out:chname")
BooleanOptionKey const	chtimestamp ("out:chtimestamp")
BooleanOptionKey const	dry_run ("out:dry_run")
StringOptionKey const	mpi_tracer_to_file ("out:mpi_tracer_to_file")
IntegerOptionKey const	std_IO_exit_error_code ("out:std_IO_exit_error_code")
StringOptionKey const	user_tag ("out:user_tag")
StringOptionKey const	output_tag ("out:output_tag")
BooleanOptionKey const	save_times ("out:save_times")

Function Documentation

chname()

BooleanOptionKey const out::chname

(

"out:chname"

)

chtimestamp()

BooleanOptionKey const out::chtimestamp

(

"out:chtimestamp"

)

database_filter()

StringVectorOptionKey const out::database_filter

(

"out:database_filter"

)

database_protocol_id()

IntegerOptionKey const out::database_protocol_id

(

"out:database_protocol_id"

)

dry_run()

BooleanOptionKey const out::dry_run

(

"out:dry_run"

)

Referenced by basic::ComparingTracer::ComparingTracer().

level()

IntegerOptionKey const out::level

(

"out:level"

)

Referenced by main().

levels()

StringVectorOptionKey const out::levels

(

"out:levels"

)

Referenced by main().

membrane_pdb()

BooleanOptionKey const out::membrane_pdb

(

"out:membrane_pdb"

)

membrane_pdb_thickness()

RealOptionKey const out::membrane_pdb_thickness

(

"out:membrane_pdb_thickness"

)

mmCIF()

BooleanOptionKey const out::mmCIF

(

"out:mmCIF"

)

mmCIF_gz()

BooleanOptionKey const out::mmCIF_gz

(

"out:mmCIF_gz"

)

mmtf()

BooleanOptionKey const out::mmtf

(

"out:mmtf"

)

mmtf_gz()

BooleanOptionKey const out::mmtf_gz

(

"out:mmtf_gz"

)

mover_controlled_output_name()

BooleanOptionKey const out::mover_controlled_output_name

(

"out:mover_controlled_output_name"

)

mpi_tracer_to_file()

StringOptionKey const out::mpi_tracer_to_file

(

"out:mpi_tracer_to_file"

)

Referenced by basic::options::pre_tracer_process().

mute()

StringVectorOptionKey const out::mute

(

"out:mute"

)

no_color()

BooleanOptionKey const out::no_color

(

"out:no_color"

)

no_nstruct_label()

BooleanOptionKey const out::no_nstruct_label

(

"out:no_nstruct_label"

)

nooutput()

BooleanOptionKey const out::nooutput

(

"out:nooutput"

)

Referenced by distribute_jobs(), main(), my_main(), register_options(), and DomainAssemblerNDocker::run().

nstruct()

IntegerOptionKey const out::nstruct

(

"out:nstruct"

)

Referenced by protocols::abinitio::ApplicationContext::ApplicationContext(), base_pair_to_base_pair_test(), cluster_outfile_test(), cluster_silent_file_data(), cluster_test(), coarse_rna_denovo_test(), create_ensemble(), cst_relax_test(), define_states_test(), dna_dr_loop_test(), dna_stats(), protocols::abinitio::JumpSpecificAbrelax::do_distributed_rerun(), doit(), erraser2_test(), protocols::abinitio::JumpSpecificAbrelax::fold(), idealize_tf_pose(), ligand_dock_main_jd1(), luxr_test(), main(), modeler_closure_test(), rebuild_centroid_test(), protocols::abinitio::ApplicationContext::register_options(), register_options(), protocols::abinitio::JumpSpecificAbrelax::register_options(), register_options_broker(), rna_build_helix_test(), rna_build_helix_test_OLD(), rna_design_gap_test(), rna_design_test(), rna_fullatom_multiscore_test(), rna_protein_rb_test(), DomainAssemblerNDocker::run(), FragmentAssemblyMover::run(), stepwise_monte_carlo_legacy(), swa_rna_sample(), use_backrub(), and zf_relax_test().

out()

BooleanOptionKey const out::out

(

"out"

)

output()

BooleanOptionKey const out::output

(

"out:output"

)

Referenced by main(), and my_main().

output_tag()

StringOptionKey const out::output_tag

(

"out:output_tag"

)

Referenced by dna_specificity_test(), dna_stats(), luxr_test(), morph_pdbs_test(), tf_specificity_test(), zf_relax_test(), zf_test(), and zif268_test().

overwrite()

BooleanOptionKey const out::overwrite

(

"out:overwrite"

)

Referenced by build_full_model_test(), BuildFullModel::BuildFullModel(), StepWiseJobQueen::complete_larval_job_maturation(), main(), my_main(), rna_fullatom_minimize_test(), and stepwise_monte_carlo_legacy().

pdb()

BooleanOptionKey const out::pdb

(

"out:pdb"

)

Referenced by main(), output_residue_types(), register_options(), rna_fullatom_minimize_test(), and run().

pdb_gz()

BooleanOptionKey const out::pdb_gz

(

"out:pdb_gz"

)

Referenced by main().

prefix()

StringOptionKey const out::prefix

(

"out:prefix"

)

Referenced by myspace::Scheduler::accept_and_report(), ConstraintToolMover::apply(), LoopHashRelax_Sampler::apply(), CrystFFTDock::apply(), calc_rmsf_and_avrg(), determine_output_name(), myspace::evaluate_and_write(), extract_pdbs_test(), ga_main(), main(), my_main(), nucleobase_probe_score_test(), OPT_KEY(), rb_entropy_test(), apps::pilot::momeara::register_options(), myspace::Scheduler::run_combine(), myspace::Scheduler::run_LHeval(), myspace::Scheduler::run_NM_evalmodes(), sequence_tolerance_main(), and sequence_tolerance_mf_main().

resume_batch()

IntegerVectorOptionKey const out::resume_batch

(

"out:resume_batch"

)

save_times()

BooleanOptionKey const out::save_times

(

"out:save_times"

)

scorecut()

RealOptionKey const out::scorecut

(

"out:scorecut"

)

Referenced by main().

sf()

FileOptionKey const out::sf

(

"out:sf"

)

Referenced by register_options().

show_accessed_options()

BooleanOptionKey const out::show_accessed_options

(

"out:show_accessed_options"

)

show_unused_options()

BooleanOptionKey const out::show_unused_options

(

"out:show_unused_options"

)

shuffle_nstruct()

IntegerOptionKey const out::shuffle_nstruct

(

"out:shuffle_nstruct"

)

silent_gz()

BooleanOptionKey const out::silent_gz

(

"out:silent_gz"

)

std_IO_exit_error_code()

IntegerOptionKey const out::std_IO_exit_error_code

(

"out:std_IO_exit_error_code"

)

suffix()

StringOptionKey const out::suffix

(

"out:suffix"

)

Referenced by CrystFFTDock::apply(), determine_output_name(), and main().

unmute()

StringVectorOptionKey const out::unmute

(

"out:unmute"

)

use_database()

BooleanOptionKey const out::use_database

(

"out:use_database"

)

user_tag()

StringOptionKey const out::user_tag

(

"out:user_tag"

)