BuildFullModel Class Reference

Public Member Functions
	BuildFullModel ()
void	make_built_residues_repulsive (Pose const &start_pose, Pose &full_model_pose, utility::vector1< PoseOP > const &)
void	make_built_residues_virtual (Pose const &start_pose, Pose &full_model_pose, utility::vector1< PoseOP > const &other_ops)
void	fill_and_sample_full_model (Pose &start_pose, utility::vector1< PoseOP > const &other_ops, core::scoring::ScoreFunctionOP const &sfxn)

Private Attributes
protocols::rna::denovo::RNA_DeNovoProtocolOP	rna_de_novo_protocol_ = nullptr
core::pose::PoseOP	native_pose_ = nullptr

Constructor & Destructor Documentation

BuildFullModel()

BuildFullModel::BuildFullModel

(

)

References in::file::native(), option, out::overwrite(), out::file::silent(), basic::options::OptionKeys::inout::dbms::user, value, and basic::options::OptionKeys::stepwise::virtualize_free_moieties_in_native.

Member Function Documentation

fill_and_sample_full_model()

void BuildFullModel::fill_and_sample_full_model	(	Pose &	start_pose,
		utility::vector1< PoseOP > const &	other_ops,
		core::scoring::ScoreFunctionOP const &	sfxn
	)

References basic::Tracer::Blue, utility::io::oc::cout, basic::Tracer::Cyan, basic::options::OptionKeys::matdes::dock::dump_pdb, basic::Tracer::Green, basic::Tracer::Magenta, option, basic::Tracer::Red, basic::Tracer::Reset, oop_conformations::scorefxn, test.T120_core::sfxn, out::file::silent(), basic::options::OptionKeys::stepwise::superimpose_over_all, tag, tag_from_pose(), TR, value, and basic::Tracer::Yellow.

Referenced by build_full_model_test().

make_built_residues_repulsive()

void BuildFullModel::make_built_residues_repulsive	(	Pose const &	start_pose,
		Pose &	full_model_pose,
		utility::vector1< PoseOP > const &
	)

References utility::vector1< T, A >::has_value(), basic::Tracer::Magenta, output_seq_with_residue_emphasis(), basic::Tracer::Reset, runtime_assert, TR, basic::Tracer::Trace, and basic::Tracer::Yellow.

make_built_residues_virtual()

void BuildFullModel::make_built_residues_virtual	(	Pose const &	start_pose,
		Pose &	full_model_pose,
		utility::vector1< PoseOP > const &	other_ops
	)

References utility::vector1< T, A >::has_value(), basic::Tracer::Magenta, option, basic::Tracer::Reset, TR, and basic::Tracer::Yellow.

Member Data Documentation

native_pose_

core::pose::PoseOP BuildFullModel::native_pose_ = nullptr

private

rna_de_novo_protocol_

protocols::rna::denovo::RNA_DeNovoProtocolOP BuildFullModel::rna_de_novo_protocol_ = nullptr

private

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The documentation for this class was generated from the following file:

• src/apps/public/stepwise/build_full_model.cc