morph_pdbs.cc File Reference

#include <core/types.hh>
#include <core/pose/util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/copydofs/CopyDofsInfo.hh>
#include <devel/init.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/simple_moves/CopyDofMover.hh>
#include <protocols/viewer/viewers.hh>
#include <numeric/angle.functions.hh>
#include <utility/string_util.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <utility/excn/Exceptions.hh>

Typedefs
typedef numeric::xyzMatrix< Real >	Matrix
typedef utility::vector1< std::pair< core::id::DOF_ID, core::Real > >	DofsInfo

Functions
void	morph_by_internal_coords (pose::Pose &pose, pose::PoseCOP pose_start, pose::PoseCOP pose_end, utility::vector1< pose::PoseCOP > &morph_poses, Size const num_samples=24)
void	morph_pdbs_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Typedef Documentation

DofsInfo

typedef utility::vector1< std::pair< core::id::DOF_ID, core::Real > > DofsInfo

Matrix

typedef numeric::xyzMatrix< Real > Matrix

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), my_main(), NEW_OPT, and viewer_main().

morph_by_internal_coords()

void morph_by_internal_coords	(	pose::Pose &	pose,
		pose::PoseCOP	pose_start,
		pose::PoseCOP	pose_end,
		utility::vector1< pose::PoseCOP > &	morph_poses,
		Size const	num_samples = 24
	)

References create_a3b_hbs::first, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, PHI, beta_nonlocal::pose, numeric::principal_angle(), and runtime_assert.

Referenced by morph_pdbs_test().

morph_pdbs_test()

void morph_pdbs_test

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, detail::find(), ObjexxFCL::lead_zero_string_of(), morph_by_internal_coords(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, option, out::output_tag(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, basic::options::OptionKeys::mp::assembly::poses, utility::replace_in(), runtime_assert, in::file::s(), basic::options::OptionKeys::frags::scoring::scoring, tag, and basic::options::OptionKeys::inout::dbms::user.

Referenced by my_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, morph_pdbs_test(), option, out::output(), and in::file::s().

Referenced by main().