nucleobase_sample_around.cc File Reference

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/rna/util.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <devel/init.hh>
#include <utility/io/ozstream.hh>
#include <ObjexxFCL/string.functions.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/toolbox/sample_around/util.hh>
#include <protocols/viewer/viewers.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/sample_around.OptionKeys.gen.hh>
#include <iostream>
#include <string>
#include <utility/excn/Exceptions.hh>
#include <core/id/AtomID.hh>

Typedefs
using	Matrix = numeric::xyzMatrix< Real >

Functions
void	nucleobase_probe_score_test ()
void	quick_score_test ()
void *	my_main (void *)
int	main (int argc, char *argv[])

Typedef Documentation

Matrix

using Matrix = numeric::xyzMatrix<Real>

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References sample_around::alpha_increment(), argv, sample_around::cosbeta_increment(), test.T009_Exceptions::e, sample_around::gamma_increment(), basic::init(), my_main(), NEW_OPT, option, and viewer_main().

my_main()

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit, nucleobase_probe_score_test(), option, and quick_score_test().

Referenced by main().

nucleobase_probe_score_test()

void nucleobase_probe_score_test

(

)

References add_virtual_res(), basic::options::OptionKeys::chemical::chemical, count, utility::io::oc::cout, pyrosetta::create_score_function, create_a3b_hbs::f, create_a3b_hbs::i, enumerate_junctions::int, create_a3b_hbs::j, ObjexxFCL::lead_zero_string_of(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, option, erraser_single_res_analysis::out, basic::options::OptionKeys::recces::out_prefix, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, out::prefix(), rotate_into_nucleobase_frame(), runtime_assert, docking::s, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, basic::options::OptionKeys::in::file::silent, out::file::silent(), basic::options::OptionKeys::inout::dbms::user, score::weights(), x, predPRE::y, and predPRE::z.

Referenced by my_main().

quick_score_test()

void quick_score_test

(

)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, pyrosetta::create_score_function, create_a3b_hbs::i, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, docking::s, oop_conformations::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::inout::dbms::user, and score::weights().

Referenced by my_main().