indel Namespace Reference

Variables
IntegerOptionKey const	start_res ("indel::start_res")
IntegerOptionKey const	end_res ("indel::end_res")
IntegerOptionKey const	loop_length ("indel::loop_length")
IntegerOptionKey const	num_to_dock ("indel::num_to_dock")
BooleanOptionKey const	dump_initial_results ("indel::dump_initial_results")

Variable Documentation

dump_initial_results

BooleanOptionKey const indel::dump_initial_results("indel::dump_initial_results")

(

"indel::dump_initial_results"

)

Referenced by main().

end_res

IntegerOptionKey const indel::end_res("indel::end_res")

(

"indel::end_res"

)

Referenced by ExposedStrandMover::apply(), calculate_motif_scores(), calculate_theoretical_RNA_length(), calculate_theoretical_RNA_length_with_bond_angle_dependence(), compute_motif_score(), do_backrub(), filterAlignment(), get_second_2_helices(), main(), pdbslice(), present_in_native(), region_constraint_score(), region_density_score(), region_rmsd(), region_rmsd_structures_aligned(), region_score(), sample_rama_test(), score_loop(), score_loops(), setup_pose(), slice_pdb(), slice_sequence(), and two_region_rmsd().

loop_length

IntegerOptionKey const indel::loop_length("indel::loop_length")

(

"indel::loop_length"

)

Referenced by designloop(), jitterloop(), kinclose(), main(), relaxloop(), and set_loop_conformation().

num_to_dock

IntegerOptionKey const indel::num_to_dock("indel::num_to_dock")

(

"indel::num_to_dock"

)

Referenced by main().

start_res

IntegerOptionKey const indel::start_res("indel::start_res")

(

"indel::start_res"

)

Referenced by LoopHash_Analyze::apply(), LoopHashRelax_Sampler::apply(), calculate_motif_scores(), calculate_theoretical_RNA_length(), calculate_theoretical_RNA_length_with_bond_angle_dependence(), compute_motif_score(), do_backrub(), filterAlignment(), get_second_2_helices(), main(), pdbslice(), present_in_native(), region_constraint_score(), region_density_score(), region_rmsd(), region_rmsd_structures_aligned(), region_score(), sample_rama_test(), score_loop(), score_loops(), setup_pose(), slice_pdb(), slice_sequence(), and two_region_rmsd().