calcFractionFolded.cc File Reference

#include <basic/Tracer.hh>
#include <core/chemical/util.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/conformation/Residue.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/SequenceMapping.hh>
#include <core/import_pose/import_pose.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/util.hh>
#include <core/types.hh>
#include <core/sequence/ABEGOManager.hh>
#include <devel/init.hh>
#include <utility/vector1.hh>
#include <protocols/jumping/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <utility/io/ozstream.hh>
#include <iostream>
#include <string>
#include <ObjexxFCL/format.hh>

Functions
Real	two_region_rmsd (Pose &mod_pose, Pose const &ref_pose, SequenceAlignment aln, Size start_res, Size end_res, Size region2_start_res, Size region2_end_res)
Real	region_rmsd (Pose &mod_pose, Pose const &ref_pose, SequenceAlignment aln, Size start_res, Size end_res)
int	main (int argc, char *argv[])

Variables
static basic::Tracer	tr ("calcFractionFolded")

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::chemical::chemical, test.T009_Exceptions::e, ObjexxFCL::format::F(), test.T110_numeric::I, create_a3b_hbs::ii, basic::init(), gaussian-sampling::input, kk, in::file::native(), docking::native_pose, usec::native_sequence, out::file::o(), option, bin_torsions::output, pyrosetta.distributed.io::pose_from_file, region_rmsd(), average_rmsds::rmsd, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, ObjexxFCL::size(), and revert_app::threshold.

region_rmsd()

Real region_rmsd	(	Pose &	mod_pose,
		Pose const &	ref_pose,
		SequenceAlignment	aln,
		Size	start_res,
		Size	end_res
	)

References aln, indel::end_res, indel::start_res, and two_region_rmsd().

Referenced by filterNonCore(), and main().

two_region_rmsd()

Real two_region_rmsd	(	Pose &	mod_pose,
		Pose const &	ref_pose,
		SequenceAlignment	aln,
		Size	start_res,
		Size	end_res,
		Size	region2_start_res,
		Size	region2_end_res
	)

References aln, indel::end_res, create_a3b_hbs::ii, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::relax::sequence, and indel::start_res.

Referenced by region_rmsd().

Variable Documentation

tr

basic::Tracer tr("calcFractionFolded") ( "calcFractionFolded"  )

static