average_rmsds Namespace Reference

Functions
def	mean (x)
def	subangstrom (x)

Variables
	parser = argparse.ArgumentParser()
	job_path = parser.parse_args().job
list	rebuild_rmsds = []
list	centroid_rmsds = []
list	fullatom_rmsds = []
	subjob_pattern = os.path.join(job_path, '???')
	subjobs = glob.glob(subjob_pattern)
	log_path = os.path.join(subjob_path, 'output.txt')
	rmsd = float(line.split()[2])

Function Documentation

mean()

def average_rmsds.mean

(

x

)

References run_backbone.float, ObjexxFCL.len(), and sum().

Referenced by subangstrom().

subangstrom()

def average_rmsds.subangstrom

(

x

)

References run_backbone.float, ObjexxFCL.len(), and mean().

Variable Documentation

centroid_rmsds

list average_rmsds.centroid_rmsds = []

fullatom_rmsds

list average_rmsds.fullatom_rmsds = []

job_path

average_rmsds.job_path = parser.parse_args().job

log_path

average_rmsds.log_path = os.path.join(subjob_path, 'output.txt')

parser

average_rmsds.parser = argparse.ArgumentParser()

rebuild_rmsds

list average_rmsds.rebuild_rmsds = []

rmsd

average_rmsds.rmsd = float(line.split()[2])

Referenced by align_pdbs_function(), ConstraintMinimizer.apply(), LocalRmsd.apply(), RNA_ScoreMover.apply(), MPDomainAssembly.apply(), assign_rigid_body_settings_to_clusters_test(), backrub_protocol(), build_next_nucleotide_test(), calc_base_centroid_rmsd(), numeric::alignment::QCPKernel< Real >.calc_coordinate_superposition(), calc_rmsd_test(), calc_rmsf_and_avrg(), calculate_helical_tail_variance(), calculate_variations(), myspace.CArmsd_and_superimpose_pose(), check_alignment_RMSD_cutoff(), cluster_rigid_body_settings_test(), create_node_comparison_table(), distance(), do_the_match(), dock(), drrafter_error_estimation(), dump_pose(), myspace.evaluate_and_write(), filterNonCore(), find_close_parents(), full_length_rmsd_over_reside_list_general(), get_aligned_crd(), get_min_frag_rmsd(), get_rmsd(), get_rmsd_debug(), GetRmsd(), homolog_finder(), FragMonteCarlo.initialize_frag_assignment(), is_new_cluster_center_rotamer(), ligand_rmsd(), FragMonteCarlo.load_scorefiles(), main(), minimize_protocol(), my_main(), output_all_repeats(), output_centroid_silent_struct(), print_res_freqs(), ExposedStrandMover.print_sheets_extras(), rb_entropy_test(), reavrg(), rebuild_test(), register_options(), FragMonteCarlo.report_results(), rescore_pose(), rna_fullatom_minimize_silent_test(), rna_fullatom_minimize_test(), rna_lores_score_silent_test(), rna_protein_rb_test(), run(), RunPepSpec(), score_and_minimize(), score_clustered_frags(), search_translations(), and writeScores().

subjob_pattern

average_rmsds.subjob_pattern = os.path.join(job_path, '???')

subjobs

average_rmsds.subjobs = glob.glob(subjob_pattern)