jdock.cc File Reference

#include <numeric/xyzVector.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/id/AtomID.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <core/pose/variant_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/minimization_packing/SaneMinMover.hh>
#include <core/scoring/rms_util.hh>
#include <devel/init.hh>
#include <iostream>
#include <string>
#include <core/types.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/james.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <utility/excn/Exceptions.hh>

Classes
class	SetupMover

Functions
void	dump_pose (std::string const &tag, core::pose::Pose &pose, core::pose::Pose const &orig_pose, core::scoring::ScoreFunctionOP scorefxn)
int	main (int argc, char *argv[])

Function Documentation

dump_pose()

void dump_pose	(	std::string const &	tag,
		core::pose::Pose &	pose,
		core::pose::Pose const &	orig_pose,
		core::scoring::ScoreFunctionOP	scorefxn
	)

References utility::io::oc::cout, basic::options::OptionKeys::cluster::gdtmm, beta_nonlocal::pose, average_rmsds::rmsd, and tag.

Referenced by main(), and OutputManager::OutputManager().

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, basic::options::OptionKeys::constraints::constraints, james::debug(), dump_pose(), test.T009_Exceptions::e, create_a3b_hbs::ii, basic::init(), vancomycin::min_mover, beta_nonlocal::mm, option, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, in::file::s(), oop_conformations::scorefxn, basic::options::OptionKeys::broker::setup, ObjexxFCL::string_of(), and tag.