kick_n_terminus.cc File Reference

#include <core/pose/Pose.hh>
#include <core/id/NamedAtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/balanced_kic/algorithms.hh>
#include <devel/init.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicPerturber.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzVector.io.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <iomanip>
#include <unistd.h>

Classes
class	NullKinematicPerturber

Functions
void	make_random_perturbation (ClosureProblem &problem)
void	pick_random_solution (SolutionList const &solutions, ClosureSolution const *&solution)
void	devel_main (int argc, char **argv)
void	protocols_main (int argc, char **argv)
int	main (int argc, char **argv)

Function Documentation

devel_main()

void devel_main	(	int	argc,
		char **	argv
	)

References argv, utility::io::oc::cout, closure_error::first_pivot, basic::options::OptionKeys::optE::fixed, create_a3b_hbs::i, ObjexxFCL::index(), basic::init(), rna_decompose::input_pdb, create_a3b_hbs::j, NEW_OPT, option, output_pdb(), beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, numeric::random::rg(), numeric::random::RandomGenerator::set_seed(), closure_error::solutions, closure_error::third_pivot, numeric::interpolation::to_string(), and basic::options::OptionKeys::in::file::xyz.

Referenced by main().

main()

int main	(	int	argc,
		char **	argv
	)

References argv, and devel_main().

make_random_perturbation()

void make_random_perturbation

(

ClosureProblem &

problem

)

References create_a3b_hbs::i, basic::options::OptionKeys::AnchoredDesign::filters::omega, oop_conformations::phi, oop_conformations::psi, numeric::random::rg(), and numeric::random::RandomGenerator::uniform().

pick_random_solution()

void pick_random_solution	(	SolutionList const &	solutions,
		ClosureSolution const *&	solution
	)

References ObjexxFCL::index(), numeric::random::RandomGenerator::random_range(), numeric::random::rg(), and closure_error::solutions.

protocols_main()

void protocols_main	(	int	argc,
		char **	argv
	)

References argv, utility::io::oc::cout, closure_error::first_pivot, basic::options::OptionKeys::optE::fixed, basic::init(), rna_decompose::input_pdb, create_a3b_hbs::j, NEW_OPT, basic::options::OptionKeys::AnchoredDesign::filters::omega, option, output_pdb(), oop_conformations::phi, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, oop_conformations::psi, numeric::random::rg(), numeric::random::RandomGenerator::set_seed(), and closure_error::third_pivot.