SuperDeviationMover Class Reference

Inheritance diagram for SuperDeviationMover:

Public Member Functions
	SuperDeviationMover (core::pose::Pose const &native_pose)
virtual std::string	get_name () const
void	apply (core::pose::Pose &pose)
void	print_stats ()
	SuperDeviationMover (core::pose::Pose const &native_pose)
virtual std::string	get_name () const
void	apply (core::pose::Pose &pose)
void	print_stats ()
	SuperDeviationMover (core::pose::Pose const &native_pose, bool superimpose=true)
std::string	get_name () const override
void	apply (core::pose::Pose &pose) override
void	print_stats ()

Private Attributes
core::pose::Pose const &	native_pose_
utility::vector1< std::string >	pose_tags_
utility::vector1< utility::vector1< core::Real > >	deviations_
bool	superimpose_

Constructor & Destructor Documentation

SuperDeviationMover() [1/3]

SuperDeviationMover::SuperDeviationMover ( core::pose::Pose const &  native_pose )

inline

Referenced by main().

SuperDeviationMover() [2/3]

SuperDeviationMover::SuperDeviationMover ( core::pose::Pose const &  native_pose )

inline

SuperDeviationMover() [3/3]

SuperDeviationMover::SuperDeviationMover ( core::pose::Pose const &  native_pose, bool  superimpose = true  )

inline

Member Function Documentation

apply() [1/3]

void SuperDeviationMover::apply ( core::pose::Pose &  pose )

inline

References utility::io::ozstream::close(), utility::io::oc::cout, deviations_, build_jacobian::distance, create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), beta_nonlocal::pose, pose_tags_, runtime_assert, tag, and tag_from_pose().

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

apply() [2/3]

void SuperDeviationMover::apply ( core::pose::Pose &  pose )

inline

References deviations_, build_jacobian::distance, create_a3b_hbs::ii, native_pose_, and beta_nonlocal::pose.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

apply() [3/3]

void SuperDeviationMover::apply ( core::pose::Pose &  pose )

inlineoverride

References utility::io::ozstream::close(), utility::io::oc::cout, deviations_, build_jacobian::distance, create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), beta_nonlocal::pose, pose_tags_, runtime_assert, superimpose_, tag, and tag_from_pose().

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

get_name() [1/3]

virtual std::string SuperDeviationMover::get_name ( ) const

inlinevirtual

get_name() [2/3]

virtual std::string SuperDeviationMover::get_name ( ) const

inlinevirtual

get_name() [3/3]

std::string SuperDeviationMover::get_name ( ) const

inlineoverride

print_stats() [1/3]

void SuperDeviationMover::print_stats ( )

inline

References calc_median(), calc_min(), utility::io::ozstream::close(), run::debug(), deviations_, ObjexxFCL::format::F(), create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), basic::options::OptionKeys::mp::mutate_relax::nmodels, create_a3b_hbs::nres, option, pose_tags_, ObjexxFCL::string_of(), tag, and tag_from_pose().

print_stats() [2/3]

void SuperDeviationMover::print_stats ( )

inline

References begin, utility::io::oc::cout, deviations_, end, and create_a3b_hbs::ii.

print_stats() [3/3]

void SuperDeviationMover::print_stats ( )

inline

References calc_median(), calc_min(), utility::io::ozstream::close(), run::debug(), deviations_, ObjexxFCL::format::F(), create_a3b_hbs::ii, beta_nonlocal::jj, native_pose_, natoms(), basic::options::OptionKeys::mp::mutate_relax::nmodels, create_a3b_hbs::nres, option, pose_tags_, ObjexxFCL::string_of(), tag, and tag_from_pose().

Member Data Documentation

deviations_

utility::vector1< utility::vector1< core::Real > > SuperDeviationMover::deviations_

private

Referenced by apply(), and print_stats().

native_pose_

core::pose::Pose const & SuperDeviationMover::native_pose_

private

Referenced by apply(), and print_stats().

pose_tags_

utility::vector1< std::string > SuperDeviationMover::pose_tags_

private

Referenced by apply(), and print_stats().

superimpose_

bool SuperDeviationMover::superimpose_

private

Referenced by apply().

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The documentation for this class was generated from the following files:

• src/apps/pilot/james/casp9_superdev.cc
• src/apps/pilot/james/super.cc
• src/apps/pilot/james/superdev.cc