UniformPerturber Class Reference

Inheritance diagram for UniformPerturber:

Public Types
typedef KinematicPerturber	parent

Public Member Functions
	UniformPerturber ()
string	perturber_type () const
void	perturb_chain (core::pose::Pose const &pose, utility::vector1< core::Real > &torsions, utility::vector1< core::Real > &bond_ang, utility::vector1< core::Real > &bond_len)
void	set_pose_after_closure (core::pose::Pose &pose, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bond_ang, utility::vector1< core::Real > const &bond_len, bool closure_successful) const
void	set_vary_ca_bond_angles (bool vary_ca_bond_angles)

Private Attributes
bool	vary_ca_bond_angles_
bool	sample_omega_for_pre_prolines_
core::scoring::Ramachandran const &	rama_

Member Typedef Documentation

parent

typedef KinematicPerturber UniformPerturber::parent

Constructor & Destructor Documentation

UniformPerturber()

UniformPerturber::UniformPerturber

(

)

Member Function Documentation

perturb_chain()

void UniformPerturber::perturb_chain	(	core::pose::Pose const &	pose,
		utility::vector1< core::Real > &	torsions,
		utility::vector1< core::Real > &	bond_ang,
		utility::vector1< core::Real > &	bond_len
	)

References numeric::random::RandomGenerator::gaussian(), myspace::get_movemap(), create_a3b_hbs::i, basic::options::OptionKeys::loops::kic_omega_sampling, beta_nonlocal::mm, basic::options::option, beta_nonlocal::pose, numeric::random::rg(), internal_coordinates::torsions, numeric::random::uniform(), and numeric::random::RandomGenerator::uniform().

perturber_type()

string UniformPerturber::perturber_type ( ) const

inline

set_pose_after_closure()

void UniformPerturber::set_pose_after_closure	(	core::pose::Pose &	pose,
		utility::vector1< core::Real > const &	torsions,
		utility::vector1< core::Real > const &	bond_ang,
		utility::vector1< core::Real > const &	bond_len,
		bool	closure_successful
	)		const

References val2thr::atom, offset, beta_nonlocal::pose, numeric::conversions::radians(), res, and internal_coordinates::torsions.

set_vary_ca_bond_angles()

void UniformPerturber::set_vary_ca_bond_angles ( bool  vary_ca_bond_angles )

inline

Member Data Documentation

rama_

core::scoring::Ramachandran const& UniformPerturber::rama_

private

sample_omega_for_pre_prolines_

bool UniformPerturber::sample_omega_for_pre_prolines_

private

vary_ca_bond_angles_

bool UniformPerturber::vary_ca_bond_angles_

private

---

The documentation for this class was generated from the following file:

• src/apps/pilot/kale/examples/kic_rama_bias.cc