val2thr Namespace Reference

Variables
	fin_names = sys.argv[1:]
	fin = open(fin_name)
string	ext = "pdb"
string	fout_name = fin_name[:-4] + "_val2thr" + fin_name[-4:]
	fout = open(fout_name, 'w')
bool	on_val = False
	res = line[17:20]
	atom = line[12:16]
string	newline = line[:12] + atom + " " + res + line[20:]

Variable Documentation

atom

string val2thr.atom = line[12:16]

Referenced by Sasa.apply(), backrub_min_test(), PairDistance.calc_rsd_sasa(), calc_sasa(), apps::pilot::SampleSecondaryStructureAlignmentMover.center_of_mass(), cl_score(), ClosabilityScore.closability_score(), dump_efactor_pdb(), dump_pose_diff(), MPInterfaceStatistics.get_inout_orientation(), get_models(), get_radius(), main(), output_packstat_pdb(), print_node(), print_tree(), rebuild(), reroot_restype(), run_parallel_docking(), UniformPerturber.set_pose_after_closure(), test_actcoord(), transform_pose(), tweak_coords(), use_in_rmsd(), and use_in_rmsd_offset().

ext

string val2thr.ext = "pdb"

Referenced by pseudoTrace.add_to_C(), pseudoTrace.add_to_N(), ui::task.create_viewer_for_file(), basic::database.find_database_path(), main(), and parse_ss_regions().

fin

val2thr.fin = open(fin_name)

Referenced by numeric::fourier.kiss_fft(), numeric::fourier.kiss_fft_stride(), numeric::fourier.kiss_fftnd(), and main().

fin_names

val2thr.fin_names = sys.argv[1:]

fout

val2thr.fout = open(fout_name, 'w')

Referenced by HBondReporter.apply(), create_score_function_from_weights_and_refEs(), dump_hbonds(), numeric::fourier.kiss_fft(), numeric::fourier.kiss_fft_stride(), numeric::fourier.kiss_fftnd(), main(), simple_rotamer_recovery(), test_PCA_eigen(), and write_buns_and_dots_kinemage().

fout_name

string val2thr.fout_name = fin_name[:-4] + "_val2thr" + fin_name[-4:]

newline

string val2thr.newline = line[:12] + atom + " " + res + line[20:]

Referenced by ScoreFunctionFingerprintMover.apply(), detail.parse_chrono_format(), and readline().

on_val

bool val2thr.on_val = False

res

string val2thr.res = line[17:20]