Rosetta: pseudoTrace Class Reference

Rosetta

Public Member Functions
	pseudoTrace (core::Size seed, utility::vector1< pseudoCA > const &calist)

void	add_to_C (core::Size ext, utility::vector1< pseudoCA > const &calist)

void	add_to_N (core::Size ext, utility::vector1< pseudoCA > const &calist)

core::Size	get_C ()

core::Size	get_N ()

core::Size	size () const

core::Size	get (core::Size i)

core::Real	score () const

bool	is_subset (const pseudoTrace &other) const

bool	contains (core::Size idx) const

Private Attributes
utility::vector1< core::Size >	traceF_

utility::vector1< core::Size >	traceB_

core::Real	score_

core::Real	DENS_WT

core::Real	DIST_WT

core::Real	ANGLE_WT

core::Real	OVERLAP_WT

Constructor & Destructor Documentation

◆ pseudoTrace()

pseudoTrace::pseudoTrace	(	core::Size	seed,
		utility::vector1< pseudoCA > const &	calist
	)

inline

References ANGLE_WT, DENS_WT, DIST_WT, OVERLAP_WT, score_, traceB_, and traceF_.

Member Function Documentation

◆ add_to_C()

void pseudoTrace::add_to_C	(	core::Size	ext,
		utility::vector1< pseudoCA > const &	calist
	)

inline

References basic::options::OptionKeys::hotspot::angle, numeric::angle_radians(), ANGLE_WT, DENS_WT, dist(), DIST_WT, val2thr::ext, get(), create_a3b_hbs::i, enumerate_junctions::int, oop_conformations::length, max(), OVERLAP_WT, score_, size(), and traceF_.

Referenced by run_trace().

◆ add_to_N()

void pseudoTrace::add_to_N	(	core::Size	ext,
		utility::vector1< pseudoCA > const &	calist
	)

inline

References basic::options::OptionKeys::hotspot::angle, numeric::angle_radians(), ANGLE_WT, DENS_WT, dist(), DIST_WT, val2thr::ext, get(), create_a3b_hbs::i, oop_conformations::length, max(), OVERLAP_WT, score_, size(), and traceB_.

Referenced by run_trace().

◆ contains()

bool pseudoTrace::contains ( core::Size idx ) const

inline

References detail::find(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::idx, traceB_, and traceF_.

Referenced by is_subset().

◆ get()

core::Size pseudoTrace::get ( core::Size i )

inline

References create_a3b_hbs::i, traceB_, and traceF_.

Referenced by add_to_C(), and add_to_N().

◆ get_C()

core::Size pseudoTrace::get_C ( )

inline

References traceF_.

Referenced by run_trace().

◆ get_N()

core::Size pseudoTrace::get_N ( )

inline

References traceB_.

Referenced by run_trace().

◆ is_subset()

bool pseudoTrace::is_subset ( const pseudoTrace & other ) const

inline

References contains(), create_a3b_hbs::i, size(), and traceF_.

Referenced by pseudoTraceRecords::addTrace().

◆ score()

core::Real pseudoTrace::score ( ) const

inline

References score_.

Referenced by pseudoTraceRecords::addTrace(), and operator<().

◆ size()

core::Size pseudoTrace::size ( ) const

inline

References traceB_, and traceF_.

Referenced by add_to_C(), add_to_N(), and is_subset().

Member Data Documentation

◆ ANGLE_WT

core::Real pseudoTrace::ANGLE_WT

private

Referenced by add_to_C(), add_to_N(), and pseudoTrace().

◆ DENS_WT

core::Real pseudoTrace::DENS_WT

private

Referenced by add_to_C(), add_to_N(), and pseudoTrace().

◆ DIST_WT

core::Real pseudoTrace::DIST_WT

private

Referenced by add_to_C(), add_to_N(), and pseudoTrace().

◆ OVERLAP_WT

core::Real pseudoTrace::OVERLAP_WT

private

Referenced by add_to_C(), add_to_N(), and pseudoTrace().

◆ score_

core::Real pseudoTrace::score_

private

Referenced by add_to_C(), add_to_N(), pseudoTrace(), and score().

◆ traceB_

utility::vector1< core::Size > pseudoTrace::traceB_

private

Referenced by add_to_N(), contains(), get(), get_N(), pseudoTrace(), and size().

◆ traceF_

utility::vector1< core::Size > pseudoTrace::traceF_

private

Referenced by add_to_C(), contains(), get(), get_C(), is_subset(), pseudoTrace(), and size().

The documentation for this class was generated from the following file:

src/apps/pilot/frank/pseudo_ca_trace.cc