PairDistance Class Reference

local mover for testing purposes More...

Inheritance diagram for PairDistance:

Public Types
typedef protocols::jd2::parser::BluePrint	BluePrint
typedef protocols::jd2::parser::BluePrintOP	BluePrintOP
typedef protocols::fldsgn::topology::SS_Info2	SS_Info2
typedef protocols::fldsgn::topology::SS_Info2_OP	SS_Info2_OP

Public Member Functions
	PairDistance ()
virtual	~PairDistance ()
virtual std::string	get_name () const
virtual protocols::moves::MoverOP	fresh_instance () const
utility::vector1< Real >	calc_rsd_sasa (Pose const &pose) const
virtual void	apply (core::pose::Pose &pose)

Private Attributes
protocols::fldsgn::topology::SS_Info2_OP	ssinfo_
protocols::jd2::parser::BluePrintOP	blueprint_
std::ofstream	output_
bool	ssinput_

Detailed Description

local mover for testing purposes

Member Typedef Documentation

BluePrint

typedef protocols::jd2::parser::BluePrint PairDistance::BluePrint

BluePrintOP

typedef protocols::jd2::parser::BluePrintOP PairDistance::BluePrintOP

SS_Info2

typedef protocols::fldsgn::topology::SS_Info2 PairDistance::SS_Info2

SS_Info2_OP

typedef protocols::fldsgn::topology::SS_Info2_OP PairDistance::SS_Info2_OP

Constructor & Destructor Documentation

PairDistance()

PairDistance::PairDistance ( )

inline

References blue, lactamize::filename, option, erraser_single_res_analysis::out, bin_torsions::output, and basic::options::OptionKeys::inout::dbms::user.

~PairDistance()

virtual PairDistance::~PairDistance ( )

inlinevirtual

Member Function Documentation

apply()

virtual void PairDistance::apply ( core::pose::Pose &  pose )

inlinevirtual

References utility::io::oc::cout, extract_by_sidechain_sasa_score::cutoff, dist(), basic::options::OptionKeys::in::file::dssp, h, create_a3b_hbs::i, create_a3b_hbs::ii, create_a3b_hbs::j, beta_nonlocal::jj, oop_conformations::length, numeric::log(), option, localrmsd::output_name, beta_nonlocal::pose, spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::prob, and create_a3b_hbs::score.

Referenced by pyrosetta.distributed.tasks.rosetta_scripts.BaseRosettaScriptsTask::execute().

calc_rsd_sasa()

utility::vector1< Real > PairDistance::calc_rsd_sasa ( Pose const &  pose ) const

inline

References val2thr::atom, create_a3b_hbs::j, option, beta_nonlocal::pose, and basic::options::OptionKeys::cluster::radius.

fresh_instance()

virtual protocols::moves::MoverOP PairDistance::fresh_instance ( ) const

inlinevirtual

get_name()

virtual std::string PairDistance::get_name ( ) const

inlinevirtual

Member Data Documentation

blueprint_

protocols::jd2::parser::BluePrintOP PairDistance::blueprint_

private

output_

std::ofstream PairDistance::output_

private

ssinfo_

protocols::fldsgn::topology::SS_Info2_OP PairDistance::ssinfo_

private

ssinput_

bool PairDistance::ssinput_

private

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The documentation for this class was generated from the following file:

• src/apps/pilot/nobuyasu/pair_distance.cc