gen3bpy.cc File Reference

#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/willmatch.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/import_pose/import_pose.hh>
#include <devel/init.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Stub.hh>
#include <core/pose/Pose.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/scoring/ImplicitFastClashCheck.hh>
#include <sstream>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <core/pose/init_id_map.hh>
#include <apps/pilot/will/mynamespaces.ihh>
#include <apps/pilot/will/will_util.ihh>

Functions
Real	sqr (Real const r)
Real	sigmoidish_neighbor (Real const &sqdist)
std::pair< Size, Size >	makesplitwork_3bpy (Size total)
void	run ()
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("gen3bpy")
static core::io::silent::SilentFileData	sfd

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

References argv, test.T009_Exceptions::e, basic::init(), and run().

makesplitwork_3bpy()

std::pair<Size,Size> makesplitwork_3bpy

(

Size

total

)

References basic::options::option, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::willmatch::splitwork, basic::options::TR, and basic::options::OptionKeys::inout::dbms::user.

Referenced by run().

run()

void run

(

)

References basic::options::OptionKeys::willmatch::chi1_increment, basic::options::OptionKeys::willmatch::chi2_increment, basic::options::OptionKeys::willmatch::clash_dis, numeric::xyzVector< T >::distance_squared(), ObjexxFCL::format::F(), utility::file_basename(), detail::find(), PREcst::fname, basic::options::OptionKeys::willmatch::forbid_residues, test.T020_Pose_Bindings::ft, create_a3b_hbs::i, test.T110_numeric::I, basic::init(), basic::options::OptionKeys::willmatch::interface_size, ObjexxFCL::lead_zero_string_of(), makesplitwork_3bpy(), max(), min(), N, create_a3b_hbs::nres, basic::options::option, erraser_single_res_analysis::out, basic::options::OptionKeys::willmatch::poi, basic::options::OptionKeys::willmatch::poidis, beta_nonlocal::pose, pyrosetta.distributed.io::pose_from_file, predPRE::R2, numeric::rotation_matrix_degrees(), basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::out::sf, sigmoidish_neighbor(), subloop_histogram::size, binder::split(), basic::options::TR, numeric::xyzMatrix< T >::transposed(), basic::options::OptionKeys::inout::dbms::user, x, numeric::xyzVector< T >::x(), xform_pose(), numeric::xyzVector< T >::y(), and numeric::xyzVector< T >::z().

Referenced by main().

sigmoidish_neighbor()

Real sigmoidish_neighbor ( Real const &  sqdist )

inline

References dist(), and sqr().

Referenced by EnvToolMover::apply(), MatchSet::c2_iface_check(), MatchSet::iface_check(), run(), and sicfast().

sqr()

Real sqr ( Real const  r )

inline

References create_a3b_hbs::r.

Referenced by sigmoidish_neighbor().

Variable Documentation

sfd

core::io::silent::SilentFileData sfd

static

TR

basic::Tracer TR("gen3bpy") ( "gen3bpy"  )

static