Classes
class	IncludeSet

class	Binder
	Bindings Generator - represent object that can generate binding info for function, class, enum or data variable. More...

struct	ConstructorBindingInfo

class	ClassBinder

class	Config

class	Context
	Context - root, hold bindings info for whole TranslationUnit. More...

class	EnumBinder

class	FunctionBinder

class	vector_binder

class	map_binder

Typedefs
typedef std::shared_ptr< Binder >	BinderOP

typedef std::vector< BinderOP >	Binders

Functions
llvm::raw_ostream &	operator<< (llvm::raw_ostream &os, Binder const &b)

string	template_specialization (clang::CXXRecordDecl const *C)

string	class_name (CXXRecordDecl const *C)

string	python_class_name (CXXRecordDecl const *C)

string	class_qualified_name (CXXRecordDecl const *C)

vector< QualType >	get_type_dependencies (CXXRecordDecl const *C)

bool	is_inherited_from_enable_shared_from_this (CXXRecordDecl const *C)

bool	is_field_assignable (FieldDecl const *f)

bool	is_bindable (FieldDecl *f)
	check if generator can create binding More...

string	bind_data_member (FieldDecl const *d, string const &class_qualified_name_)

bool	is_const_overload (CXXMethodDecl *mc)

bool	is_std_function_bindable (CXXRecordDecl const *C)

bool	is_bindable_raw (clang::CXXRecordDecl const *C)
	check if generator can create binding More...

bool	is_bindable (clang::CXXRecordDecl const *C)
	check if generator can create binding More...

bool	is_binding_requested (clang::CXXRecordDecl const *C, Config const &config)
	check if user requested binding for the given declaration More...

bool	is_skipping_requested (clang::CXXRecordDecl const *C, Config const &config)
	check if user requested skipping for the given declaration More...

void	add_relevant_includes (clang::CXXRecordDecl const *C, IncludeSet &includes, int level)

void	add_includes_to_set (std::vector< std::string > const &from, IncludeSet &to)

void	add_relevant_includes_cached (clang::CXXRecordDecl const *C, IncludeSet &includes)

bool	base_default_default_constructor_available (CXXRecordDecl const *C)
	DEPRECATED Check if all bases have public default constructors. More...

string	generate_opaque_declaration_if_needed (string const &qualified_name, string const &qualified_name_without_template)

string	binding_public_data_members (CXXRecordDecl const *C)

string	callback_structure_name (CXXRecordDecl const *C)

bool	is_callback_structure_needed (CXXRecordDecl const *C)

bool	is_callback_structure_constructible (CXXRecordDecl const *C)

string	bind_member_functions_for_call_back (CXXRecordDecl const C, string const &class_name, set< string > &binded, int &ret_id, std::vector< clang::FunctionDecl const > &prefix_includes_)

string	binding_public_member_functions (CXXRecordDecl const *C, bool callback_structure, bool callback_structure_constructible, Context &context)

string	binding_template_bases (CXXRecordDecl const *C, bool callback_structure, bool callback_structure_constructible, Context &context)

string	bind_forward_declaration (CXXRecordDecl const *C, Context &context)
	Create forward-binding for given class which consist of only class type without any member, function or constructors. More...

string	bind_constructor (ConstructorBindingInfo const &CBI, uint args_to_bind, bool request_bindings_f)

string	bind_default_constructor (ConstructorBindingInfo const &CBI)
	Generate code for binding default constructor. More...

string	bind_copy_constructor (ConstructorBindingInfo const &CBI)

string	bind_constructor (ConstructorBindingInfo const &CBI)

std::string	class_name (clang::CXXRecordDecl const *C)

std::string	class_qualified_name (clang::CXXRecordDecl const *C)

std::vector< clang::QualType >	get_type_dependencies (clang::CXXRecordDecl const *C)

std::vector< clang::NamedDecl const * >	get_decl_dependencies (clang::CXXRecordDecl const *C)

std::string	bind_forward_declaration (clang::CXXRecordDecl const *C, Context &)
	Create forward-binding for forward declared class (no class members given) More...

std::pair< string, string >	split_in_two (string const &s, string const &error_string)
	Split string in two by ether space or tab character. More...

void	add_relevant_includes (clang::EnumDecl const *E, IncludeSet &includes, int level)
	extract include needed for this generator and add it to includes vector More...

bool	is_bindable (EnumDecl const *E)
	check if generator can create binding More...

bool	is_binding_requested (clang::EnumDecl const *E, Config const &config)
	check if user requested binding for the given declaration More...

bool	is_skipping_requested (clang::EnumDecl const *E, Config const &config)
	check if user requested skipping for the given declaration More...

std::string	getQualifiedNameAsStringLLVM5Fix (NamedDecl const *E)

std::string	bind_enum (std::string const &module, EnumDecl const *E)

bool	is_bindable (clang::EnumDecl const *E)
	check if generator can create binding More...

std::string	bind_enum (std::string const &module, clang::EnumDecl const *E)

string	cpp_python_operator (const FunctionDecl &F)

string	function_arguments (clang::FunctionDecl const *record)
	Generate function argument list separated by comma. More...

pair< string, string >	function_arguments_for_lambda (clang::FunctionDecl const *record, uint n)

tuple< string, string, string >	function_arguments_for_py_overload (clang::FunctionDecl const *record)

string	template_specialization (FunctionDecl const *F)

string	python_function_name (FunctionDecl const *F)

string	function_pointer_type (FunctionDecl const *F)

string	function_qualified_name (FunctionDecl const *F, bool omit_return_type)

vector< QualType >	get_type_dependencies (FunctionDecl const *F)
	generate human redable C++ type signature for given function More...

bool	is_binding_requested (FunctionDecl const *F, Config const &config)
	check if user requested binding for the given declaration More...

bool	is_skipping_requested (FunctionDecl const *F, Config const &config)
	check if user requested skipping for the given declaration More...

string	bind_function (FunctionDecl const F, uint args_to_bind, bool request_bindings_f, Context &context, CXXRecordDecl const parent, bool always_use_lambda)

string	bind_function (string const &module, FunctionDecl const F, Context &context, CXXRecordDecl const parent, bool always_use_lambda)

void	add_relevant_includes (FunctionDecl const *F, IncludeSet &includes, int level)
	extract include needed for this generator and add it to includes vector More...

bool	is_bindable_raw (FunctionDecl const *F)
	check if generator can create binding More...

bool	is_bindable (FunctionDecl const *F)
	check if generator can create binding More...

bool	is_overloadable (CXXMethodDecl const *M)
	check if methods could be overload in Python More...

std::string	python_function_name (clang::FunctionDecl const *F)
	generate string representing class name that could be used in python More...

std::string	function_pointer_type (clang::FunctionDecl const *record)
	Generate function pointer type string for given function. Example void ()(int, doule)_ or void (ClassName::)(int, doule)_ for memeber function. More...

std::string	function_qualified_name (clang::FunctionDecl const *F, bool omit_return_type=false)
	generate qualified function name that could be used in bindings code including template specialization if any More...

bool	is_binding_requested (clang::FunctionDecl const *F, Config const &config)
	check if user requested binding for the given declaration More...

bool	is_skipping_requested (clang::FunctionDecl const *F, Config const &config)
	check if user requested skipping for the given declaration More...

std::string	bind_function (std::string const &module, clang::FunctionDecl const F, Context &, clang::CXXRecordDecl const parent=nullptr, bool always_use_lambda=false)

void	add_relevant_includes (clang::FunctionDecl const *F, IncludeSet &includes, int level)
	extract include needed for this generator and add it to includes vector More...

bool	is_bindable (clang::FunctionDecl const *F)
	check if generator can create binding More...

bool	is_overloadable (clang::CXXMethodDecl const *M)
	check if methods could be overload in Python More...

bool	is_binding_requested (clang::QualType const &qt, Config const &config)
	check if user requested binding for the given QualType More...

bool	is_skipping_requested (QualType const &qt, Config const &config)

bool	is_function_type (QualType const &qt)

string	relevant_include (NamedDecl const *decl)

void	add_relevant_include_for_decl (NamedDecl const *decl, IncludeSet &includes)

void	add_relevant_includes (QualType const &qt, IncludeSet &includes, int level)
	extract include needed for this generator and add it to includes vector More...

bool	is_bindable (QualType const &qt)

void	request_bindings (clang::QualType const &qt, Context &context)
	extract type info from QualType if any and bind relative type More...

string	standard_name_raw (string const &type)

string	standard_name (std::string const &type)
	transform give type name to standard form More...

string	simplify_std_class_name_raw (string const &type)
	Attempt to simplify std:: name by removing unneded template arguments. Function assume that there is no 'std::' namespaces prefix at the beginning of the argument string. More...

string	simplify_std_class_name (string const &type)
	Attempt to simplify std:: name by removing unneded template arguments. Function assume that there is no 'std::' namespaces prefix at the beginning of the argument string. More...

bool	is_python_builtin (NamedDecl const *C)
	check if given class/struct is builtin in Python and therefor should not be binded More...

bool	is_banned_symbol (clang::NamedDecl const *D)
	check if class/struct/function/enum is in banned symbol lists More...

bool	is_skipping_requested (clang::QualType const &qt, Config const &config)
	check if user requested skipping for the given QualType More...

bool	is_function_type (clang::QualType const &qt)

std::string	relevant_include (clang::NamedDecl const *decl)
	extract include path needed for declaration itself (without template dependency if any), return empty string if no include could be found More...

void	add_relevant_include_for_decl (clang::NamedDecl const *decl, IncludeSet &includes)
	extract include path needed for declaration itself (without template dependency if any), do nothing if include could not be found (ie for build-in's) More...

void	add_relevant_includes (clang::QualType const &qt, IncludeSet &includes, int level)
	extract include needed for this generator and add it to includes vector More...

bool	is_bindable (clang::QualType const &qt)
	check if given QualType is bindable More...

bool	is_python_builtin (clang::NamedDecl const *C)
	check if given class/struct is builtin in Python and therefor should not be binded More...

vector< string >	split (string const &buffer, string const &separator)
	Split string using given separator. More...

void	replace_reverse (string &r, string const &from, string const &to)
	Replace all occurrences of string. More...

void	replace (std::string &r, std::string const &from, std::string const &to)
	Replace all occurrences of string in-place. More...

string	replace_ (string const &s, string const &from, string const &to)
	Replace all occurrences of string and return result as new string. More...

bool	begins_with (std::string const &source, std::string const &prefix)
	check if string begins with given prefix More...

bool	ends_with (std::string const &source, std::string const &prefix)
	check if string ends with given prefix More...

string	indent (std::string const &code, std::string const &indentation)
	indent given code More...

std::string	trim (std::string const &s)
	remove leading and trailing tabs and spaces More...

void	update_source_file (std::string const &prefix, std::string const &file_name, std::string const &code)
	Try to read exisitng file and if content does not match to code - write a new version. Also create nested dirs starting from prefix if nessesary. More...

string	namespace_from_named_decl (NamedDecl const *decl)

string	typename_from_type_decl (TypeDecl const *decl)
	generate unique string representation of type represented by given declaration More...

string	base_namespace (string const &ns)
	Calculate base (upper) namespace for given one: core::pose::motif --> core::pose. More...

string	last_namespace (string const &ns)
	Calculate last namespace for given one: core::pose::motif --> motif. More...

void	fix_boolean_types (std::string &type)
	replace all _Bool types with bool More...

string	expresion_to_string (clang::Expr *e)
	Generate string representation of given expression. More...

string	template_argument_to_string (clang::TemplateArgument const &)
	Generate string representation of given TemplateArgument. More...

string	line_number (NamedDecl const *decl)

string	mangle_type_name (std::string const &name, bool mark_template=true)
	generate string represeting class name that could be used in python More...

string	generate_comment_for_declaration (clang::NamedDecl const *decl)
	generate C++ comment line for given declaration along with file path and line number More...

string	get_text (comments::Comment const *C, SourceManager const &SM, SourceLocation previous)

std::string	generate_documentation_string_for_declaration (clang::Decl const *)
	extract doc string (Doxygen comments) for given declaration and convert it to C++ code More...

std::string	namespace_from_named_decl (clang::NamedDecl const *decl)
	calculate namespace path from given NamedDecl, like: std, core::pose More...

std::string	typename_from_type_decl (clang::TypeDecl const *decl)

std::string	line_number (clang::NamedDecl const *decl)
	calculate line in source file for NamedDecl More...

Variables
const char *	call_back_function_body_template

char const *	constructor_template = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }} ), \"doc\");"

char const *	constructor_template_with_py_arg = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }} ), \"doc\" {3});"

char const *	constructor_with_trampoline_template = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }}, []({0}){{ return new {3}({1}); }} ), \"doc\");"

Typedef Documentation

◆ BinderOP

typedef std::shared_ptr<Binder> binder::BinderOP

◆ Binders

typedef std::vector<BinderOP> binder::Binders

Function Documentation

◆ add_includes_to_set()

void binder::add_includes_to_set	(	std::vector< std::string > const &	from,
		IncludeSet &	to
	)

inline

References binder::IncludeSet::add_include(), and create_a3b_hbs::i.

◆ add_relevant_include_for_decl() [1/2]

void binder::add_relevant_include_for_decl	(	clang::NamedDecl const *	decl,
		IncludeSet &	includes
	)

extract include path needed for declaration itself (without template dependency if any), do nothing if include could not be found (ie for build-in's)

◆ add_relevant_include_for_decl() [2/2]

void binder::add_relevant_include_for_decl	(	NamedDecl const *	decl,
		IncludeSet &	includes
	)

References binder::IncludeSet::add_include(), begins_with(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::D, create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, name, O_annotate_includes, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, relevant_include(), and standard_name().

Referenced by add_relevant_includes().

◆ add_relevant_includes() [1/6]

void binder::add_relevant_includes	(	clang::CXXRecordDecl const *	C,
		IncludeSet &	includes,
		int	level
	)

References binder::IncludeSet::add_decl(), add_relevant_include_for_decl(), C, test.T020_Pose_Bindings::ft, ObjexxFCL::get(), create_a3b_hbs::i, is_bindable(), is_skipping_requested(), basic::options::OptionKeys::out::level, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, docking::s, subloop_histogram::size, predPRE::t, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::v.

Referenced by add_relevant_includes(), binder::ClassBinder::add_relevant_includes(), binder::EnumBinder::add_relevant_includes(), and binder::FunctionBinder::add_relevant_includes().

◆ add_relevant_includes() [2/6]

void binder::add_relevant_includes	(	clang::EnumDecl const *	E,
		IncludeSet &	includes,
		int	level
	)

extract include needed for this generator and add it to includes vector

References binder::IncludeSet::add_decl(), add_relevant_include_for_decl(), ObjexxFCL::format::E(), and basic::options::OptionKeys::out::level.

◆ add_relevant_includes() [3/6]

void binder::add_relevant_includes	(	clang::FunctionDecl const *	F,
		IncludeSet &	includes,
		int	level
	)

extract include needed for this generator and add it to includes vector

◆ add_relevant_includes() [4/6]

void binder::add_relevant_includes	(	clang::QualType const &	qt,
		IncludeSet &	includes,
		int	level
	)

extract include needed for this generator and add it to includes vector

◆ add_relevant_includes() [5/6]

void binder::add_relevant_includes	(	FunctionDecl const *	F,
		IncludeSet &	includes,
		int	level
	)

extract include needed for this generator and add it to includes vector

References binder::IncludeSet::add_decl(), add_relevant_include_for_decl(), add_relevant_includes(), ObjexxFCL::format::F(), get_type_dependencies(), basic::options::OptionKeys::out::level, and predPRE::t.

◆ add_relevant_includes() [6/6]

void binder::add_relevant_includes	(	QualType const &	qt,
		IncludeSet &	includes,
		int	level
	)

extract include needed for this generator and add it to includes vector

References test.T009_Exceptions::e, basic::options::OptionKeys::out::level, and create_a3b_hbs::r.

◆ add_relevant_includes_cached()

void binder::add_relevant_includes_cached	(	clang::CXXRecordDecl const *	C,
		IncludeSet &	includes
	)

◆ base_default_default_constructor_available()

bool binder::base_default_default_constructor_available ( CXXRecordDecl const * C )

DEPRECATED Check if all bases have public default constructors.

References compute_difference::b, C, docking::R, and predPRE::t.

Referenced by binder::ClassBinder::bind().

◆ base_namespace()

std::string binder::base_namespace ( string const & ns )

Calculate base (upper) namespace for given one: core::pose::motif --> core::pose.

References create_a3b_hbs::f.

Referenced by binder::Context::create_all_nested_namespaces(), and binder::Context::generate().

◆ begins_with()

bool binder::begins_with	(	std::string const &	source,
		std::string const &	prefix
	)

check if string begins with given prefix

References create_a3b_hbs::prefix.

Referenced by add_relevant_include_for_decl(), bind_function(), generate_opaque_declaration_if_needed(), is_banned_symbol(), is_bindable(), binder::Config::is_include_skipping_requested(), binder::Config::is_namespace_binding_requested(), binder::Config::is_namespace_skipping_requested(), and standard_name_raw().

◆ bind_constructor() [1/2]

string binder::bind_constructor ( ConstructorBindingInfo const & CBI )

References binder::ConstructorBindingInfo::T.

Referenced by binder::ClassBinder::bind().

◆ bind_constructor() [2/2]

string binder::bind_constructor	(	ConstructorBindingInfo const &	CBI,
		uint	args_to_bind,
		bool	request_bindings_f
	)

References find_lowest_scoring_relaxed_struct::args, kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, binder::ConstructorBindingInfo::C, binder::ConstructorBindingInfo::class_qualified_name, constructor_template, constructor_template_with_py_arg, constructor_with_trampoline_template, binder::ConstructorBindingInfo::context, pyrosetta.tests.distributed.test_dask::format, function_arguments(), function_arguments_for_lambda(), create_a3b_hbs::i, basic::options::OptionKeys::dna::specificity::params, request_bindings(), binder::ConstructorBindingInfo::T, binder::ConstructorBindingInfo::trampoline, and binder::ConstructorBindingInfo::trampoline_qualified_name.

◆ bind_copy_constructor()

string binder::bind_copy_constructor ( ConstructorBindingInfo const & CBI )

Generate copy constructor in most cases this will be just: "\tcl.def(pybind11::init<{} const &>());\n"_format(binding_qualified_name); but for POD structs with zero data mambers this will be a lambda function. This is done as a workaround for Pybind11 2,2+ bug

References binder::ConstructorBindingInfo::C, binder::ConstructorBindingInfo::class_qualified_name, binder::ConstructorBindingInfo::T, binder::ConstructorBindingInfo::trampoline, and binder::ConstructorBindingInfo::trampoline_qualified_name.

Referenced by binder::ClassBinder::bind().

◆ bind_data_member()

string binder::bind_data_member	(	FieldDecl const *	d,
		string const &	class_qualified_name_
	)

References class_qualified_name(), ends_with(), and is_field_assignable().

Referenced by binding_public_data_members().

◆ bind_default_constructor()

string binder::bind_default_constructor ( ConstructorBindingInfo const & CBI )

Generate code for binding default constructor.

References binder::ConstructorBindingInfo::C, binder::ConstructorBindingInfo::class_qualified_name, binder::ConstructorBindingInfo::trampoline, and binder::ConstructorBindingInfo::trampoline_qualified_name.

Referenced by binder::ClassBinder::bind().

◆ bind_enum() [1/2]

std::string binder::bind_enum	(	std::string const &	module,
		clang::EnumDecl const *	E
	)

◆ bind_enum() [2/2]

std::string binder::bind_enum	(	std::string const &	module,
		EnumDecl const *	E
	)

References ObjexxFCL::format::E(), test.T009_Exceptions::e, generate_documentation_string_for_declaration(), ObjexxFCL::get(), getQualifiedNameAsStringLLVM5Fix(), pyrosetta.utility.array::module, name, namespace_from_named_decl(), and create_a3b_hbs::r.

Referenced by binder::ClassBinder::bind(), and binder::EnumBinder::bind().

◆ bind_forward_declaration() [1/2]

std::string binder::bind_forward_declaration	(	clang::CXXRecordDecl const *	C,
		Context &
	)

Create forward-binding for forward declared class (no class members given)

◆ bind_forward_declaration() [2/2]

string binder::bind_forward_declaration	(	CXXRecordDecl const *	C,
		Context &	context
	)

Create forward-binding for given class which consist of only class type without any member, function or constructors.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, C, class_qualified_name(), ObjexxFCL::get(), is_inherited_from_enable_shared_from_this(), line_number(), binder::Context::module_variable_name(), namespace_from_named_decl(), python_class_name(), and relevant_include().

◆ bind_function() [1/3]

string binder::bind_function	(	FunctionDecl const *	F,
		uint	args_to_bind,
		bool	request_bindings_f,
		Context &	context,
		CXXRecordDecl const *	parent,
		bool	always_use_lambda
	)

◆ bind_function() [2/3]

std::string binder::bind_function	(	std::string const &	module,
		clang::FunctionDecl const *	F,
		Context &	,
		clang::CXXRecordDecl const *	parent = `nullptr`,
		bool	always_use_lambda = `false`
	)

◆ bind_function() [3/3]

string binder::bind_function	(	string const &	module,
		FunctionDecl const *	F,
		Context &	context,
		CXXRecordDecl const *	parent,
		bool	always_use_lambda
	)

References ObjexxFCL::format::F(), create_a3b_hbs::i, is_function_type(), and pyrosetta.utility.array::module.

Referenced by binder::FunctionBinder::bind().

◆ bind_member_functions_for_call_back()

string binder::bind_member_functions_for_call_back	(	CXXRecordDecl const *	C,
		string const &	class_name,
		set< string > &	binded,
		int &	ret_id,
		std::vector< clang::FunctionDecl const * > &	prefix_includes_
	)

◆ binding_public_data_members()

string binder::binding_public_data_members ( CXXRecordDecl const * C )

References bind_data_member(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, C, class_qualified_name(), create_a3b_hbs::f, is_bindable(), docking::s, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::u.

Referenced by binder::ClassBinder::bind(), and binding_template_bases().

◆ binding_public_member_functions()

string binder::binding_public_member_functions	(	CXXRecordDecl const *	C,
		bool	callback_structure,
		bool	callback_structure_constructible,
		Context &	context
	)

References bind_function(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, C, test.T020_Pose_Bindings::ft, ObjexxFCL::get(), is_bindable(), is_const_overload(), is_skipping_requested(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, docking::s, and kmeans_adaptive_kernel_density_bb_dependent_rotlib::u.

Referenced by binder::ClassBinder::bind(), and binding_template_bases().

◆ binding_template_bases()

string binder::binding_template_bases	(	CXXRecordDecl const *	C,
		bool	callback_structure,
		bool	callback_structure_constructible,
		Context &	context
	)

References compute_difference::b, binding_public_data_members(), binding_public_member_functions(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, C, ObjexxFCL::get(), is_skipping_requested(), and docking::R.

Referenced by binder::ClassBinder::bind().

◆ callback_structure_name()

string binder::callback_structure_name ( CXXRecordDecl const * C )

inline

References C, mangle_type_name(), namespace_from_named_decl(), python_class_name(), and replace_().

Referenced by binder::ClassBinder::bind(), bind_member_functions_for_call_back(), and binder::ClassBinder::generate_prefix_code().

◆ class_name() [1/2]

std::string binder::class_name ( clang::CXXRecordDecl const * C )

◆ class_name() [2/2]

string binder::class_name ( CXXRecordDecl const * C )

References C, namespace_from_named_decl(), res, simplify_std_class_name(), standard_name(), and template_specialization().

Referenced by bind_member_functions_for_call_back(), rosetta_binders::fixedsizearray_add_on_binder(), rosetta_binders::generic_add_on_binder_maybe_has_insertion_operator(), python_class_name(), and utility::py::wrap_access_pointer().

◆ class_qualified_name() [1/2]

std::string binder::class_qualified_name ( clang::CXXRecordDecl const * C )

◆ class_qualified_name() [2/2]

string binder::class_qualified_name ( CXXRecordDecl const * C )

References C, standard_name(), and template_specialization().

Referenced by binder::Context::add_to_binded(), binder::ClassBinder::bind(), bind_data_member(), bind_forward_declaration(), bind_function(), binder::ClassBinder::bind_repr(), binding_public_data_members(), function_pointer_type(), binder::ClassBinder::generate_prefix_code(), binder::Context::global_insertion_operator(), binder::ClassBinder::id(), is_binding_requested(), binder::Context::is_forward_needed(), is_skipping_requested(), binder::ClassBinder::maybe_base_classes(), and binder::Context::sort_binders().

◆ cpp_python_operator()

string binder::cpp_python_operator ( const FunctionDecl & F )

References ObjexxFCL::format::F(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, and vec().

Referenced by is_bindable_raw(), and python_function_name().

◆ ends_with()

bool binder::ends_with	(	std::string const &	source,
		std::string const &	prefix
	)

check if string ends with given prefix

References create_a3b_hbs::prefix.

Referenced by bind_data_member().

◆ expresion_to_string()

std::string binder::expresion_to_string ( clang::Expr * e )

Generate string representation of given expression.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::_, test.T009_Exceptions::e, and docking::s.

◆ fix_boolean_types()

void binder::fix_boolean_types ( string & type )

replace all _Bool types with bool

References create_a3b_hbs::i.

Referenced by bind_member_functions_for_call_back(), binder::ClassBinder::bind_with(), function_arguments(), function_arguments_for_lambda(), function_arguments_for_py_overload(), function_pointer_type(), function_qualified_name(), binder::Context::global_insertion_operator(), standard_name_raw(), and template_specialization().

◆ function_arguments()

std::string binder::function_arguments ( clang::FunctionDecl const * record )

Generate function argument list separated by comma.

References fix_boolean_types(), create_a3b_hbs::i, create_a3b_hbs::r, and standard_name().

Referenced by binder::FunctionBinder::bind(), bind_constructor(), bind_function(), function_pointer_type(), and function_qualified_name().

◆ function_arguments_for_lambda()

std::pair< std::string, std::string > binder::function_arguments_for_lambda	(	clang::FunctionDecl const *	record,
		uint	n
	)

Generate function argument list separated by comma name_arguments - if arguments should be named: a1, a2, ... n - number of arguments to generate. If n > num_of_function_parameters - generate only list with num_of_function_parameters

References a, fix_boolean_types(), create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, create_a3b_hbs::r, standard_name(), and numeric::interpolation::to_string().

Referenced by bind_constructor(), and bind_function().

◆ function_arguments_for_py_overload()

std::tuple< std::string, std::string, std::string > binder::function_arguments_for_py_overload ( clang::FunctionDecl const * record )

Generate function argument list with types separated by comma and with only arguments names name_arguments - if arguments should be named: a1, a2, ...

References a, fix_boolean_types(), create_a3b_hbs::i, kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, create_a3b_hbs::r, standard_name(), and numeric::interpolation::to_string().

Referenced by bind_member_functions_for_call_back().

◆ function_pointer_type() [1/2]

std::string binder::function_pointer_type ( clang::FunctionDecl const * record )

Generate function pointer type string for given function. Example void (*)(int, doule)_ or void (ClassName::*)(int, doule)_ for memeber function.

◆ function_pointer_type() [2/2]

string binder::function_pointer_type ( FunctionDecl const * F )

References class_qualified_name(), ObjexxFCL::format::F(), fix_boolean_types(), function_arguments(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, create_a3b_hbs::prefix, create_a3b_hbs::r, and standard_name().

Referenced by binder::Context::add_insertion_operator(), and bind_function().

◆ function_qualified_name() [1/2]

std::string binder::function_qualified_name	(	clang::FunctionDecl const *	F,
		bool	omit_return_type = `false`
	)

generate qualified function name that could be used in bindings code including template specialization if any

◆ function_qualified_name() [2/2]

string binder::function_qualified_name	(	FunctionDecl const *	F,
		bool	omit_return_type
	)

References ObjexxFCL::format::F(), fix_boolean_types(), function_arguments(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, create_a3b_hbs::r, standard_name(), and template_specialization().

Referenced by bind_function(), binder::FunctionBinder::id(), is_binding_requested(), is_const_overload(), and is_skipping_requested().

◆ generate_comment_for_declaration()

std::string binder::generate_comment_for_declaration ( clang::NamedDecl const * decl )

generate C++ comment line for given declaration along with file path and line number

References line_number(), relevant_include(), and standard_name().

Referenced by binder::ClassBinder::bind(), binder::EnumBinder::bind(), binder::ClassBinder::bind_with(), and binder::ClassBinder::generate_prefix_code().

◆ generate_documentation_string_for_declaration()

std::string binder::generate_documentation_string_for_declaration ( clang::Decl const * decl )

extract doc string (Doxygen comments) for given declaration and convert it to C++ code

References get_text(), create_a3b_hbs::i, replace(), sm, and utility::options::OptionKeys::options::table::text.

Referenced by binder::ClassBinder::bind(), bind_enum(), and bind_function().

◆ generate_opaque_declaration_if_needed()

string binder::generate_opaque_declaration_if_needed	(	string const &	qualified_name,
		string const &	qualified_name_without_template
	)

References begins_with(), and detail::find().

◆ get_decl_dependencies()

std::vector<clang::NamedDecl const *> binder::get_decl_dependencies ( clang::CXXRecordDecl const * C )

◆ get_text()

string binder::get_text	(	comments::Comment const *	C,
		SourceManager const &	SM,
		SourceLocation	previous
	)

References C, create_a3b_hbs::i, and create_a3b_hbs::r.

Referenced by generate_documentation_string_for_declaration(), job_manager.CommandLauncher::run(), and job_manager.SaveMovie::run().

◆ get_type_dependencies() [1/3]

std::vector<clang::QualType> binder::get_type_dependencies ( clang::CXXRecordDecl const * C )

◆ get_type_dependencies() [2/3]

vector<QualType> binder::get_type_dependencies ( CXXRecordDecl const * C )

References C, create_a3b_hbs::i, create_a3b_hbs::r, subloop_histogram::size, and predPRE::t.

Referenced by is_binding_requested(), and is_skipping_requested().

◆ get_type_dependencies() [3/3]

vector<QualType> binder::get_type_dependencies ( FunctionDecl const * F )

generate human redable C++ type signature for given function

References ObjexxFCL::format::F(), create_a3b_hbs::i, and create_a3b_hbs::r.

Referenced by add_relevant_includes(), is_binding_requested(), and is_skipping_requested().

◆ getQualifiedNameAsStringLLVM5Fix()

std::string binder::getQualifiedNameAsStringLLVM5Fix ( NamedDecl const * E )

References basic::options::OptionKeys::corrections::correct, ObjexxFCL::format::E(), and reverse().

Referenced by bind_enum().

◆ indent()

std::string binder::indent	(	string const &	code,
		string const &	indentation
	)

indent given code

References extract_by_sidechain_sasa_score::l, solution_counts::lines, create_a3b_hbs::r, and split().

Referenced by binder::ClassBinder::bind(), bind_member_functions_for_call_back(), basic::YamlEmitter::do_indent(), basic::JsonEmitter::do_indent(), basic::YamlEmitter::end_raw(), utility::options::OptionCollection::load_options_from_stream(), basic::Emitter::start_list(), basic::Emitter::start_map(), basic::YamlEmitter::start_raw(), basic::JsonEmitter::start_raw(), utility::options::OptionCollection::wrapped(), and basic::YamlEmitter::write_list_marker().

◆ is_banned_symbol()

bool binder::is_banned_symbol ( clang::NamedDecl const * D )

check if class/struct/function/enum is in banned symbol lists

References begins_with(), spectral_cluster_kmeans_adaptive_kernel_density_bb_dependent_rotlib::D, name, and standard_name().

Referenced by binder::EnumBinder::bindable(), and is_bindable_raw().

◆ is_bindable() [1/8]

bool binder::is_bindable ( clang::CXXRecordDecl const * C )

check if generator can create binding

References C, is_bindable_raw(), and create_a3b_hbs::r.

Referenced by add_relevant_includes(), binder::ClassBinder::bind(), bind_member_functions_for_call_back(), binder::ClassBinder::bind_nested_classes(), binder::ClassBinder::bindable(), binding_public_data_members(), binding_public_member_functions(), is_bindable(), is_callback_structure_constructible(), is_callback_structure_needed(), is_std_function_bindable(), and binder::ClassBinder::maybe_base_classes().

◆ is_bindable() [2/8]

bool binder::is_bindable ( clang::EnumDecl const * E )

check if generator can create binding

◆ is_bindable() [3/8]

bool binder::is_bindable ( clang::FunctionDecl const * F )

check if generator can create binding

◆ is_bindable() [4/8]

bool binder::is_bindable ( clang::QualType const & qt )

check if given QualType is bindable

◆ is_bindable() [5/8]

bool binder::is_bindable ( EnumDecl const * E )

check if generator can create binding

References ObjexxFCL::format::E(), and name.

Referenced by binder::EnumBinder::bindable().

◆ is_bindable() [6/8]

bool binder::is_bindable ( FieldDecl * f )

check if generator can create binding

References create_a3b_hbs::f, and is_bindable().

Referenced by binder::FunctionBinder::bindable(), BinderVisitor::VisitCXXRecordDecl(), and BinderVisitor::VisitFunctionDecl().

◆ is_bindable() [7/8]

bool binder::is_bindable ( FunctionDecl const * F )

check if generator can create binding

References ObjexxFCL::format::F(), is_bindable_raw(), and create_a3b_hbs::r.

Referenced by is_bindable_raw().

◆ is_bindable() [8/8]

bool binder::is_bindable ( QualType const & qt )

References begins_with(), create_a3b_hbs::r, standard_name(), and td.

◆ is_bindable_raw() [1/2]

bool binder::is_bindable_raw ( clang::CXXRecordDecl const * C )

check if generator can create binding

References C, is_banned_symbol(), is_python_builtin(), is_std_function_bindable(), and create_a3b_hbs::r.

Referenced by is_bindable().

◆ is_bindable_raw() [2/2]

bool binder::is_bindable_raw ( FunctionDecl const * F )

check if generator can create binding

References cpp_python_operator(), ObjexxFCL::format::F(), is_banned_symbol(), is_bindable(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and create_a3b_hbs::r.

Referenced by is_bindable().

◆ is_binding_requested() [1/5]

bool binder::is_binding_requested	(	clang::CXXRecordDecl const *	C,
		Config const &	config
	)

check if user requested binding for the given declaration

References C, class_qualified_name(), get_type_dependencies(), is_skipping_requested(), namespace_from_named_decl(), O_bind_class_template_specialization, standard_name(), and predPRE::t.

Referenced by is_binding_requested(), and binder::ClassBinder::request_bindings_and_skipping().

◆ is_binding_requested() [2/5]

bool binder::is_binding_requested	(	clang::EnumDecl const *	E,
		Config const &	config
	)

check if user requested binding for the given declaration

References ObjexxFCL::format::E(), and namespace_from_named_decl().

Referenced by binder::EnumBinder::request_bindings_and_skipping().

◆ is_binding_requested() [3/5]

bool binder::is_binding_requested	(	clang::FunctionDecl const *	F,
		Config const &	config
	)

check if user requested binding for the given declaration

◆ is_binding_requested() [4/5]

bool binder::is_binding_requested	(	clang::QualType const &	qt,
		Config const &	config
	)

check if user requested binding for the given QualType

References create_a3b_hbs::r.

◆ is_binding_requested() [5/5]

bool binder::is_binding_requested	(	FunctionDecl const *	F,
		Config const &	config
	)

check if user requested binding for the given declaration

References ObjexxFCL::format::F(), function_qualified_name(), get_type_dependencies(), is_binding_requested(), namespace_from_named_decl(), and predPRE::t.

Referenced by binder::FunctionBinder::request_bindings_and_skipping().

◆ is_callback_structure_constructible()

bool binder::is_callback_structure_constructible ( CXXRecordDecl const * C )

References compute_difference::b, C, ObjexxFCL::get(), is_bindable(), is_skipping_requested(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, and docking::R.

Referenced by binder::ClassBinder::bind().

◆ is_callback_structure_needed()

bool binder::is_callback_structure_needed ( CXXRecordDecl const * C )

References compute_difference::b, C, is_bindable(), is_const_overload(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, and docking::R.

Referenced by binder::ClassBinder::bind(), and binder::ClassBinder::generate_prefix_code().

◆ is_const_overload()

bool binder::is_const_overload ( CXXMethodDecl * mc )

References C, function_qualified_name(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, and name.

Referenced by bind_member_functions_for_call_back(), binding_public_member_functions(), and is_callback_structure_needed().

◆ is_field_assignable()

bool binder::is_field_assignable ( FieldDecl const * f )

References C, create_a3b_hbs::f, kmeans_adaptive_kernel_density_bb_dependent_rotlib::m, and create_a3b_hbs::r.

Referenced by bind_data_member().

◆ is_function_type() [1/2]

bool binder::is_function_type ( clang::QualType const & qt )

◆ is_function_type() [2/2]

bool binder::is_function_type ( QualType const & qt )

Referenced by bind_function().

◆ is_inherited_from_enable_shared_from_this()

bool binder::is_inherited_from_enable_shared_from_this ( CXXRecordDecl const * C )

References compute_difference::b, C, and create_a3b_hbs::r.

Referenced by binder::ClassBinder::bind(), and bind_forward_declaration().

◆ is_overloadable() [1/2]

bool binder::is_overloadable ( clang::CXXMethodDecl const * M )

check if methods could be overload in Python

◆ is_overloadable() [2/2]

bool binder::is_overloadable ( CXXMethodDecl const * M )

check if methods could be overload in Python

Referenced by bind_member_functions_for_call_back().

◆ is_python_builtin() [1/2]

bool binder::is_python_builtin ( clang::NamedDecl const * C )

check if given class/struct is builtin in Python and therefor should not be binded

◆ is_python_builtin() [2/2]

bool binder::is_python_builtin ( NamedDecl const * C )

check if given class/struct is builtin in Python and therefor should not be binded

References C, ObjexxFCL::get(), name, O_include_pybind11_stl, and standard_name().

Referenced by is_bindable_raw(), binder::Binder::is_binded(), binder::Context::is_forward_needed(), and binder::Context::request_bindings().

◆ is_skipping_requested() [1/6]

bool binder::is_skipping_requested	(	clang::CXXRecordDecl const *	C,
		Config const &	config
	)

check if user requested skipping for the given declaration

References C, class_qualified_name(), get_type_dependencies(), namespace_from_named_decl(), skip(), standard_name(), and predPRE::t.

Referenced by add_relevant_includes(), binder::ClassBinder::bind(), bind_member_functions_for_call_back(), binding_public_member_functions(), binding_template_bases(), is_binding_requested(), is_callback_structure_constructible(), binder::ClassBinder::maybe_base_classes(), and binder::ClassBinder::request_bindings_and_skipping().

◆ is_skipping_requested() [2/6]

bool binder::is_skipping_requested	(	clang::EnumDecl const *	E,
		Config const &	config
	)

check if user requested skipping for the given declaration

References ObjexxFCL::format::E(), namespace_from_named_decl(), skip(), and standard_name().

Referenced by binder::EnumBinder::request_bindings_and_skipping().

◆ is_skipping_requested() [3/6]

bool binder::is_skipping_requested	(	clang::FunctionDecl const *	F,
		Config const &	config
	)

check if user requested skipping for the given declaration

◆ is_skipping_requested() [4/6]

bool binder::is_skipping_requested	(	clang::QualType const &	qt,
		Config const &	config
	)

check if user requested skipping for the given QualType

◆ is_skipping_requested() [5/6]

bool binder::is_skipping_requested	(	FunctionDecl const *	F,
		Config const &	config
	)

check if user requested skipping for the given declaration

References C, ObjexxFCL::format::F(), function_qualified_name(), get_type_dependencies(), namespace_from_named_decl(), skip(), standard_name(), and predPRE::t.

Referenced by binder::FunctionBinder::request_bindings_and_skipping().

◆ is_skipping_requested() [6/6]

bool binder::is_skipping_requested	(	QualType const &	qt,
		Config const &	config
	)

References create_a3b_hbs::r.

Referenced by request_bindings().

◆ is_std_function_bindable()

bool binder::is_std_function_bindable ( CXXRecordDecl const * C )

References C, test.T020_Pose_Bindings::ft, create_a3b_hbs::i, is_bindable(), subloop_histogram::size, and predPRE::t.

Referenced by is_bindable_raw().

◆ last_namespace()

std::string binder::last_namespace ( string const & ns )

Calculate last namespace for given one: core::pose::motif --> motif.

References create_a3b_hbs::f.

Referenced by binder::Context::generate().

◆ line_number() [1/2]

std::string binder::line_number ( clang::NamedDecl const * decl )

calculate line in source file for NamedDecl

◆ line_number() [2/2]

string binder::line_number ( NamedDecl const * decl )

References sm, and numeric::interpolation::to_string().

Referenced by binder::FunctionBinder::bind(), bind_forward_declaration(), and generate_comment_for_declaration().

◆ mangle_type_name()

std::string binder::mangle_type_name	(	string const &	name,
		bool	mark_template
	)

generate string represeting class name that could be used in python

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::c, name, create_a3b_hbs::r, and replace().

Referenced by binder::ClassBinder::bind_with(), callback_structure_name(), and python_class_name().

◆ namespace_from_named_decl() [1/2]

std::string binder::namespace_from_named_decl ( clang::NamedDecl const * decl )

calculate namespace path from given NamedDecl, like: std, core::pose

◆ namespace_from_named_decl() [2/2]

string binder::namespace_from_named_decl ( NamedDecl const * decl )

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::n, closure_error::path, and standard_name().

Referenced by binder::ClassBinder::bind(), binder::EnumBinder::bind(), binder::FunctionBinder::bind(), bind_enum(), bind_forward_declaration(), bind_member_functions_for_call_back(), binder::ClassBinder::bind_repr(), binder::ClassBinder::bind_with(), callback_structure_name(), class_name(), binder::Context::create_all_nested_namespaces(), binder::Context::generate(), is_binding_requested(), and is_skipping_requested().

◆ operator<<()

llvm::raw_ostream & binder::operator<<	(	llvm::raw_ostream &	os,
		Binder const &	b
	)

References compute_difference::b, and closure_error::path.

◆ python_class_name()

string binder::python_class_name ( CXXRecordDecl const * C )

References C, class_name(), mangle_type_name(), and name.

Referenced by binder::ClassBinder::bind(), bind_forward_declaration(), and callback_structure_name().

◆ python_function_name() [1/2]

std::string binder::python_function_name ( clang::FunctionDecl const * F )

generate string representing class name that could be used in python

◆ python_function_name() [2/2]

string binder::python_function_name ( FunctionDecl const * F )

References cpp_python_operator(), and ObjexxFCL::format::F().

Referenced by bind_function(), and bind_member_functions_for_call_back().

◆ relevant_include() [1/2]

std::string binder::relevant_include ( clang::NamedDecl const * decl )

extract include path needed for declaration itself (without template dependency if any), return empty string if no include could be found

◆ relevant_include() [2/2]

string binder::relevant_include ( NamedDecl const * decl )

References data, and sm.

Referenced by add_relevant_include_for_decl(), binder::FunctionBinder::bind(), bind_forward_declaration(), and generate_comment_for_declaration().

◆ replace()

void binder::replace	(	string &	r,
		string const &	from,
		string const &	to
	)

Replace all occurrences of string in-place.

References create_a3b_hbs::i, and create_a3b_hbs::r.

Referenced by ExemplarMover::apply(), utility::file::FileName::assign(), utility::file::PathName::assign(), auto-DRRAFTER_setup::auto_setup_helices(), DRRAFTER_util::easy_cat(), erraser_wrapper::erraser(), erraser_wrapper::erraser_single_res(), DRRAFTER_util::extract_lowscore_decoys(), erraser_util::extract_pdb(), auto-DRRAFTER_setup_next_round::figure_out_next_round(), finalize_models::finalize(), erraser_option.erraser_option::finalize(), erraser_util::find_chi_angle(), erraser_analysis::find_chi_angle_std_pdb(), erraser_single_res_analysis::find_chi_angle_std_pdb(), binder::Context::generate(), generate_documentation_string_for_declaration(), DRRAFTER::get_coord_csts(), drrafter_rna::get_density_per_residue(), auto-DRRAFTER_setup_next_round::get_results(), get_final_ddG_scores::get_scores(), DRRAFTER_util::get_sequences(), options_class.Option::getOptionCC(), setup_for_complex_scoring_general::main(), find_lowest_scoring_relaxed_struct::main(), get_final_ddG_scores::main(), get_lowest_scoring_relaxed_models::main(), submit_jobs::make_job_files_and_submit(), mangle_type_name(), utility::file::FileName::path(), utility::file::PathName::path(), erraser_util::phenix_rna_validate(), replace_(), erraser_util::rosetta2phenix_merge_back(), self-test::run_test(), erraser_wrapper::seq_rebuild(), erraser_wrapper::seq_rebuild_new(), drrafter_rna::setup_next_round(), standard_name_raw(), submit_jobs::submit_jobs(), and erraser_wrapper::SWA_rebuild_erraser().

◆ replace_()

std::string binder::replace_	(	string const &	s,
		string const &	from,
		string const &	to
	)

Replace all occurrences of string and return result as new string.

References create_a3b_hbs::r, replace(), and docking::s.

Referenced by callback_structure_name(), and binder::Context::generate().

◆ replace_reverse()

void binder::replace_reverse	(	string &	r,
		string const &	from,
		string const &	to
	)

Replace all occurrences of string.

References create_a3b_hbs::i, and create_a3b_hbs::r.

◆ request_bindings()

void binder::request_bindings	(	clang::QualType const &	qt,
		Context &	context
	)

extract type info from QualType if any and bind relative type

References ObjexxFCL::get(), is_skipping_requested(), binder::Context::request_bindings(), td, and typename_from_type_decl().

Referenced by bind_constructor(), bind_function(), binder::ClassBinder::maybe_base_classes(), binder::ClassBinder::request_bindings_and_skipping(), binder::EnumBinder::request_bindings_and_skipping(), and binder::FunctionBinder::request_bindings_and_skipping().

◆ simplify_std_class_name()

std::string binder::simplify_std_class_name ( string const & type )

Attempt to simplify std:: name by removing unneded template arguments. Function assume that there is no 'std::' namespaces prefix at the beginning of the argument string.

Attempt to simplify std:: name by removing unneeded template arguments, assuming that there is no 'std::' namespaces prefix at the beginning of the argument string.

References create_a3b_hbs::r, and simplify_std_class_name_raw().

Referenced by class_name(), and standard_name_raw().

◆ simplify_std_class_name_raw()

string binder::simplify_std_class_name_raw ( string const & type )

Attempt to simplify std:: name by removing unneded template arguments. Function assume that there is no 'std::' namespaces prefix at the beginning of the argument string.

References ObjexxFCL::len(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, and res.

Referenced by simplify_std_class_name().

◆ split()

std::vector< std::string > binder::split	(	string const &	buffer,
		string const &	separator
	)

Split string using given separator.

References create_a3b_hbs::i, line, and solution_counts::lines.

Referenced by pyrosetta.distributed.cluster.exceptions.OutputError::__init__(), pyrosetta.distributed.viewer.core.ViewerInputError::__init__(), pyrosetta.distributed.viewer.modules.ViewerInputError::__init__(), pyrosetta.distributed::_normflags(), pyrosetta.distributed.viewer.modules::_pdbstring_to_pose(), pyrosetta.distributed.viewer.modules.setHydrogenBonds::apply(), get_junctions_from_legos::collect_junctions(), make_bindings_via_cmake::compile_sources(), build::create_package(), protocols::surface_docking::AntibodyInfoRMLoader::create_resource(), pyrosetta.distributed.dask.worker::dask_setup(), erraser_wrapper::erraser_single_res(), DRRAFTER_util::extract_lowscore_decoys(), finalize_models::finalize(), bin_torsions::find_pivots(), arls_impl::find_programs(), bin_torsions::find_title(), bin_torsions::find_y_limits(), build::generate_bindings(), build::generate_rosetta_external_cmake_files(), update_ui_project::generate_rosetta_external_project_files(), update_ui_project::generate_rosetta_libraries_project_files(), build::get_compiler_version(), erraser_util::get_fasta(), pyrosetta.protocols.h5_fragment_store_provider.H5PyFragmentStoreProvider::get_fragment_store(), enumerate_junctions.Design::get_informative_name(), options_class.Option::get_namespace(), update_ui_project::get_rosetta_external_libraries(), build::get_rosetta_include_directories(), update_ui_project::get_rosetta_include_directories(), build::get_rosetta_system_include_directories(), update_ui_project::get_rosetta_system_include_directories(), get_final_ddG_scores::get_scores(), enumerate_junctions::get_single_junction(), options_class.Option::getOptionKeysCC(), options_class.Option::getOptionKeysHH(), DRRAFTER_util::graph_from_ss(), apps::pilot::frankdt::import_motifs(), indent(), HBondReporter::load_job_data(), bin_torsions::load_torsions_from_dat(), progress_bar::main(), general_RNP_setup_script::main(), get_final_ddG_scores::main(), sphinx-doc-generator::main(), best_ifaceE::main(), get_scores::main(), prune_atdiff_top5pct::main(), main(), make_bindings_via_cmake::make_bindings_code(), bin_torsions::parse_iterations(), abbinding::partners_from_info(), erraser_util::pdb2rosetta(), erraser_util::phenix_rna_validate(), register_options(), pyrosetta.bindings.energies::residue_pair_energies_array(), erraser_util::rosetta2phenix_merge_back(), run(), run_3bpy(), self-test::run_test(), demo.D090_Ala_scan::scanning_analysis(), drrafter_rna::setup_next_round(), split_in_two(), split_string(), erraser_util::subprocess_out(), protocols::hotspot_hashing::tryParseLSMSpec(), update_source_file(), and pyrosetta::version().

◆ split_in_two()

std::pair<string, string> binder::split_in_two	(	string const &	s,
		string const &	error_string
	)

Split string in two by ether space or tab character.

References min(), docking::s, sign::space, and split().

Referenced by binder::Config::read().

◆ standard_name()

std::string binder::standard_name ( string const & type )

transform give type name to standard form

References create_a3b_hbs::r, and standard_name_raw().

Referenced by add_relevant_include_for_decl(), binder::ClassBinder::add_relevant_includes(), binder::ClassBinder::bind(), bind_function(), bind_member_functions_for_call_back(), binder::ClassBinder::bind_repr(), binder::ClassBinder::bind_with(), class_name(), class_qualified_name(), function_arguments(), function_arguments_for_lambda(), function_arguments_for_py_overload(), function_pointer_type(), function_qualified_name(), generate_comment_for_declaration(), binder::Context::global_insertion_operator(), is_banned_symbol(), is_bindable(), is_binding_requested(), is_python_builtin(), is_skipping_requested(), binder::ClassBinder::maybe_base_classes(), namespace_from_named_decl(), template_specialization(), and typename_from_type_decl().

◆ standard_name_raw()

string binder::standard_name_raw ( string const & type )

References begins_with(), fix_boolean_types(), kmeans_adaptive_kernel_density_bb_dependent_rotlib::p, create_a3b_hbs::r, replace(), and simplify_std_class_name().

Referenced by standard_name().

◆ template_argument_to_string()

std::string binder::template_argument_to_string ( clang::TemplateArgument const & t )

Generate string representation of given TemplateArgument.

References kmeans_adaptive_kernel_density_bb_dependent_rotlib::_, create_a3b_hbs::r, docking::s, and predPRE::t.

Referenced by binder::ClassBinder::bind_with(), and template_specialization().

◆ template_specialization() [1/2]

std::string binder::template_specialization ( clang::CXXRecordDecl const * C )

References C, fix_boolean_types(), create_a3b_hbs::i, subloop_histogram::size, predPRE::t, and template_argument_to_string().

Referenced by binder::ClassBinder::bind_with(), class_name(), and class_qualified_name().

◆ template_specialization() [2/2]

string binder::template_specialization ( FunctionDecl const * F )

References arg(), ObjexxFCL::format::F(), fix_boolean_types(), create_a3b_hbs::i, standard_name(), and template_argument_to_string().

Referenced by bind_function(), and function_qualified_name().

◆ trim()

std::string binder::trim ( std::string const & s )

remove leading and trailing tabs and spaces

References begin, end, and docking::s.

◆ typename_from_type_decl() [1/2]

std::string binder::typename_from_type_decl ( clang::TypeDecl const * decl )

◆ typename_from_type_decl() [2/2]

string binder::typename_from_type_decl ( TypeDecl const * decl )

generate unique string representation of type represented by given declaration

References standard_name().

Referenced by binder::Context::add(), and request_bindings().

◆ update_source_file()

void binder::update_source_file	(	std::string const &	prefix,
		std::string const &	file_name,
		std::string const &	code
	)

Try to read exisitng file and if content does not match to code - write a new version. Also create nested dirs starting from prefix if nessesary.

Try to read existing file. If file content does not match given code, overwrite the file with code. Also create nested dirs starting from prefix if nessesary.

References create_a3b_hbs::f, O_verbose, outs, closure_error::path, create_a3b_hbs::prefix, and split().

Variable Documentation

◆ call_back_function_body_template

const char* binder::call_back_function_body_template

Initial value:

= R"_(
pybind11::gil_scoped_acquire gil;
pybind11::function overload = pybind11::get_overload(static_cast<const {0} *>(this), "{1}");
if (overload) {{
  auto o = overload.operator()<pybind11::return_value_policy::reference>({2});
  if (pybind11::detail::cast_is_temporary_value_reference<{3}>::value) {{
    static pybind11::detail::override_caster_t<{3}> caster;
    return pybind11::detail::cast_ref<{3}>(std::move(o), caster);
  }}
  else return pybind11::detail::cast_safe<{3}>(std::move(o));
}}
)_"

Referenced by bind_member_functions_for_call_back().

◆ constructor_template

char const* binder::constructor_template = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }} ), \"doc\");"

Referenced by bind_constructor().

◆ constructor_template_with_py_arg

char const* binder::constructor_template_with_py_arg = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }} ), \"doc\" {3});"

Referenced by bind_constructor().

◆ constructor_with_trampoline_template

char const* binder::constructor_with_trampoline_template = "\tcl.def( pybind11::init( []({0}){{ return new {2}({1}); }}, []({0}){{ return new {3}({1}); }} ), \"doc\");"

Referenced by bind_constructor().

Classes

Typedefs

Functions

Variables

Typedef Documentation

◆ BinderOP

◆ Binders

Function Documentation

◆ add_includes_to_set()

◆ add_relevant_include_for_decl() [1/2]

◆ add_relevant_include_for_decl() [2/2]

◆ add_relevant_includes() [1/6]

◆ add_relevant_includes() [2/6]

◆ add_relevant_includes() [3/6]

◆ add_relevant_includes() [4/6]

◆ add_relevant_includes() [5/6]

◆ add_relevant_includes() [6/6]

◆ add_relevant_includes_cached()

◆ base_default_default_constructor_available()

◆ base_namespace()

◆ begins_with()

◆ bind_constructor() [1/2]

◆ bind_constructor() [2/2]

◆ bind_copy_constructor()

◆ bind_data_member()

◆ bind_default_constructor()

◆ bind_enum() [1/2]

◆ bind_enum() [2/2]

◆ bind_forward_declaration() [1/2]

◆ bind_forward_declaration() [2/2]

◆ bind_function() [1/3]

◆ bind_function() [2/3]

◆ bind_function() [3/3]

◆ bind_member_functions_for_call_back()

◆ binding_public_data_members()

◆ binding_public_member_functions()

◆ binding_template_bases()

◆ callback_structure_name()

◆ class_name() [1/2]

◆ class_name() [2/2]

◆ class_qualified_name() [1/2]

◆ class_qualified_name() [2/2]

◆ cpp_python_operator()

◆ ends_with()

◆ expresion_to_string()

◆ fix_boolean_types()

◆ function_arguments()

◆ function_arguments_for_lambda()

◆ function_arguments_for_py_overload()

◆ function_pointer_type() [1/2]

◆ function_pointer_type() [2/2]

◆ function_qualified_name() [1/2]

◆ function_qualified_name() [2/2]

◆ generate_comment_for_declaration()

◆ generate_documentation_string_for_declaration()

◆ generate_opaque_declaration_if_needed()

◆ get_decl_dependencies()

◆ get_text()

◆ get_type_dependencies() [1/3]

◆ get_type_dependencies() [2/3]

◆ get_type_dependencies() [3/3]

◆ getQualifiedNameAsStringLLVM5Fix()

◆ indent()

◆ is_banned_symbol()

◆ is_bindable() [1/8]

◆ is_bindable() [2/8]

◆ is_bindable() [3/8]

◆ is_bindable() [4/8]

◆ is_bindable() [5/8]

◆ is_bindable() [6/8]

◆ is_bindable() [7/8]

◆ is_bindable() [8/8]

◆ is_bindable_raw() [1/2]

◆ is_bindable_raw() [2/2]

◆ is_binding_requested() [1/5]

◆ is_binding_requested() [2/5]

◆ is_binding_requested() [3/5]

◆ is_binding_requested() [4/5]

◆ is_binding_requested() [5/5]

◆ is_callback_structure_constructible()